Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10226881	1.00[AMR][1000 genomes]
rs10228522	1.00[AMR][1000 genomes]
rs10239229	1.00[AMR][1000 genomes]
rs10240076	1.00[AMR][1000 genomes]
rs10260770	1.00[AMR][1000 genomes]
rs10264524	1.00[AMR][1000 genomes]
rs10277710	1.00[AMR][1000 genomes]
rs10282307	1.00[AMR][1000 genomes]
rs1034804	1.00[AMR][1000 genomes]
rs11486857	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13438716	0.87[YRI][hapmap]
rs17171725	1.00[AMR][1000 genomes]
rs17171735	1.00[AMR][1000 genomes]
rs17171746	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2214846	1.00[AMR][1000 genomes]
rs28479858	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28565517	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28644197	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4492257	1.00[AMR][1000 genomes]
rs57955744	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60699942	1.00[AMR][1000 genomes]
rs6943218	1.00[AMR][1000 genomes]
rs6975971	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73310219	1.00[AMR][1000 genomes]
rs7782395	1.00[AMR][1000 genomes]
rs7782411	1.00[AMR][1000 genomes]
rs7801001	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1025605	chr7:40623026-40789063	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv538823	chr7:40623026-40789063	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40639600-40643200	Weak transcription	Aorta	Aorta
2	chr7:40641200-40642400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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