Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93488890..93491318-chr9:93493066..93496177,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1148846	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1148847	0.80[EUR][1000 genomes]
rs1172911	0.96[AFR][1000 genomes]
rs1172912	0.96[AFR][1000 genomes]
rs1172918	0.80[EUR][1000 genomes]
rs1172919	0.83[ASN][1000 genomes]
rs1172920	0.85[ASN][1000 genomes]
rs1172921	0.85[ASN][1000 genomes]
rs1172924	0.93[ASN][1000 genomes]
rs1172925	0.92[ASN][1000 genomes]
rs1172926	0.83[ASN][1000 genomes]
rs1172927	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1172928	0.80[EUR][1000 genomes]
rs1172929	0.94[AFR][1000 genomes]
rs1172930	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1173032	0.92[ASN][1000 genomes]
rs1184620	0.93[AFR][1000 genomes]
rs2126054	0.89[AFR][1000 genomes]
rs2169237	0.88[AFR][1000 genomes]
rs2613316	0.91[AFR][1000 genomes]
rs2613326	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2810918	0.96[AFR][1000 genomes]
rs2810919	0.85[ASN][1000 genomes]
rs2810928	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv482757	chr9:93356095-93543903	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1148844	FGD3	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93490800-93499000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: