Variant report

Variant	rs114960342
Chromosome Location	chr4:15920502-15920503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15919905..15922253-chr4:15932751..15934628,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD38-4	chr4:15920182-15920551	NONHSAT095650

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv980398	chr4:15909547-15927288	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv878716	chr4:15911031-15947493	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv878717	chr4:15920423-15950731	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15911600-15924000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:15913600-15924400	Enhancers	HMEC	breast
3	chr4:15915000-15921400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:15915400-15922000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:15916400-15921800	Weak transcription	Osteobl	bone
6	chr4:15916800-15921800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:15917000-15921200	Weak transcription	NH-A	brain
8	chr4:15918400-15923800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:15918800-15920800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:15919400-15920600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:15919600-15920600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:15919600-15920600	Enhancers	Duodenum Mucosa	Duodenum
13	chr4:15919600-15920600	Enhancers	Esophagus	oesophagus
14	chr4:15919600-15920600	Enhancers	Hela-S3	cervix
15	chr4:15919600-15921000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr4:15919600-15922200	Enhancers	A549	lung
17	chr4:15919800-15920600	Enhancers	Stomach Mucosa	stomach
18	chr4:15919800-15921400	Weak transcription	NHDF-Ad	bronchial
19	chr4:15920000-15920600	Enhancers	Gastric	stomach
20	chr4:15920000-15920600	Enhancers	Lung	lung
21	chr4:15920000-15921200	Flanking Active TSS	NHEK	skin
22	chr4:15920200-15920600	Enhancers	Pancreas	Pancrea
23	chr4:15920200-15921200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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