Variant report

Variant	rs115050788
Chromosome Location	chr9:97317379-97317380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97316005..97317970-chr9:97766242..97767931,2	MCF-7	breast:
2	chr9:97316754..97318987-chr9:97400777..97403144,3	MCF-7	breast:
3	chr9:97315606..97318346-chr9:97888439..97891401,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158169	Chromatin interaction
ENSG00000165140	Chromatin interaction
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv893595	chr9:97268182-97330693	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv972786	chr9:97308737-97320211	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv18072	chr9:97316907-97320096	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97315200-97319200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr9:97315400-97318800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr9:97315600-97317400	Active TSS	Colonic Mucosa	Colon
4	chr9:97315600-97317600	Active TSS	Duodenum Mucosa	Duodenum
5	chr9:97315600-97317600	Active TSS	Rectal Mucosa Donor 31	rectum
6	chr9:97315600-97319200	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr9:97315800-97317400	Bivalent/Poised TSS	HepG2	liver
8	chr9:97315800-97317600	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr9:97316000-97317400	Active TSS	Stomach Mucosa	stomach
10	chr9:97316000-97318000	Active TSS	A549	lung
11	chr9:97316000-97318800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:97316200-97318600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:97316200-97318800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:97316200-97319200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:97316400-97317400	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr9:97316400-97318200	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr9:97316400-97318800	Active TSS	H9 Cell Line	embryonic stem cell
18	chr9:97316600-97317400	Active TSS	Fetal Muscle Trunk	muscle
19	chr9:97316600-97317400	Active TSS	NHEK	skin
20	chr9:97316600-97317600	Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr9:97316600-97318600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:97316600-97318800	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr9:97316600-97319000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr9:97316600-97319200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:97316800-97317400	Active TSS	Pancreas	Pancrea
26	chr9:97316800-97317800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:97316800-97317800	Active TSS	Placenta	Placenta
28	chr9:97316800-97318200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:97316800-97318200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:97316800-97318600	Active TSS	H1 Cell Line	embryonic stem cell
31	chr9:97316800-97318600	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr9:97316800-97318800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr9:97316800-97319200	Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr9:97317000-97317400	Flanking Active TSS	Osteobl	bone
35	chr9:97317200-97317400	Weak transcription	Liver	Liver
36	chr9:97317200-97317400	Active TSS	Hela-S3	cervix
37	chr9:97317200-97317400	Enhancers	K562	blood
38	chr9:97317200-97318600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:97317200-97321000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:97317200-97325400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:97317200-97354000	Weak transcription	Gastric	stomach

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