Variant report

Variant	rs1150561
Chromosome Location	chr6:10963847-10963848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs564261	1.00[CHB][hapmap]
rs7757494	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869525	chr6:10542254-11058329	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:10959600-10978400	Weak transcription	K562	blood
2	chr6:10960400-10968800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:10962200-10964000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:10963000-10964000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr6:10963200-10964600	Enhancers	HepG2	liver
6	chr6:10963200-10965600	Enhancers	GM12878-XiMat	blood
7	chr6:10963400-10966400	Weak transcription	A549	lung
8	chr6:10963600-10964000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
9	chr6:10963800-10965000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:10963800-10965400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:10963800-10968200	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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