Variant report

Variant	rs564261
Chromosome Location	chr6:10838596-10838597
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:10521209..10523670-chr6:10836474..10839399,2	K562	blood:
2	chr6:10836947..10840318-chr6:10885523..10889072,5	K562	blood:
3	chr6:10836947..10840318-chr6:10885523..10888026,4	K562	blood:

Variant related genes	Relation type
ENSG00000111846	Chromatin interaction
ENSG00000153157	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1150561	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966670	chr6:10447671-10871889	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv462631	chr6:10449258-10839759	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv600979	chr6:10449258-10839759	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv470800	chr6:10538944-10863325	Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv869525	chr6:10542254-11058329	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv5197	chr6:10825530-10870620	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3434664	chr6:10838537-10838840	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:10836800-10839200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:10837200-10838600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:10837200-10839000	Active TSS	Hela-S3	cervix
4	chr6:10837200-10839000	Bivalent/Poised TSS	NHDF-Ad	bronchial
5	chr6:10837200-10839200	Active TSS	H1 Cell Line	embryonic stem cell
6	chr6:10837200-10839200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:10837200-10839200	Active TSS	Right Atrium	heart
8	chr6:10837200-10839400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:10837200-10839400	Active TSS	Brain Anterior Caudate	brain
10	chr6:10837400-10838600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
11	chr6:10837400-10838600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
12	chr6:10837400-10838600	Flanking Active TSS	Liver	Liver
13	chr6:10837400-10839000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:10837400-10839000	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr6:10837400-10839000	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr6:10837400-10839000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:10837400-10839000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
18	chr6:10837400-10839000	Active TSS	K562	blood
19	chr6:10837400-10839200	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr6:10837400-10839200	Active TSS	H9 Cell Line	embryonic stem cell
21	chr6:10837400-10839200	Active TSS	Brain Hippocampus Middle	brain
22	chr6:10837400-10839200	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr6:10837400-10839200	Active TSS	Ovary	ovary
24	chr6:10837400-10839200	Active TSS	HSMM	muscle
25	chr6:10837400-10839200	Active TSS	HSMMtube	muscle
26	chr6:10837600-10838600	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:10837600-10838600	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
28	chr6:10837600-10838600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
29	chr6:10837600-10838600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
30	chr6:10837600-10838600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
31	chr6:10837600-10838600	Flanking Active TSS	HMEC	breast
32	chr6:10837600-10838600	Flanking Bivalent TSS/Enh	NHEK	skin
33	chr6:10837600-10838800	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:10837600-10838800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:10837600-10838800	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
36	chr6:10837600-10838800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:10837600-10838800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:10837600-10838800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
39	chr6:10837600-10838800	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
40	chr6:10837600-10838800	Flanking Bivalent TSS/Enh	NH-A	brain
41	chr6:10837600-10839000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:10837600-10839000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:10837600-10839000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:10837600-10839000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
45	chr6:10837600-10839000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
46	chr6:10837600-10839000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
47	chr6:10837600-10839000	Active TSS	Pancreas	Pancrea
48	chr6:10837600-10839200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr6:10837600-10839200	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr6:10837600-10839200	Active TSS	Brain Substantia Nigra	brain

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