Variant report

Variant	rs1150610
Chromosome Location	chr6:13181413-13181414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10456623	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10948523	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1150608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1150609	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1150611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150612	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1223542	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1223553	0.85[YRI][hapmap]
rs1223556	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1237055	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4273688	0.87[EUR][1000 genomes]
rs60384263	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6924931	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13153800-13184200	Weak transcription	Aorta	Aorta
2	chr6:13159200-13181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:13163600-13183400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:13164800-13183400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:13164800-13184400	Weak transcription	Pancreas	Pancrea
6	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:13176400-13183800	Weak transcription	Lung	lung
8	chr6:13176400-13191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:13178400-13184400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:13178600-13183800	Weak transcription	Fetal Heart	heart
11	chr6:13178800-13182000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:13178800-13184000	Weak transcription	Right Ventricle	heart
13	chr6:13178800-13187200	Weak transcription	Spleen	Spleen
14	chr6:13178800-13191400	Weak transcription	Left Ventricle	heart
15	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:13179200-13184800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:13180400-13182200	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:13180600-13181600	Enhancers	Fetal Brain Male	brain
19	chr6:13180800-13181600	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr6:13180800-13183600	Weak transcription	Brain Germinal Matrix	brain
21	chr6:13181000-13183000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:13181200-13181600	Enhancers	Brain Substantia Nigra	brain
23	chr6:13181200-13182000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:13181400-13181600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:13181400-13181600	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr6:13181400-13181600	Flanking Bivalent TSS/Enh	HepG2	liver
27	chr6:13181400-13181800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:13181400-13181800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:13181400-13181800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr6:13181400-13181800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:13181400-13181800	Active TSS	Fetal Brain Female	brain
32	chr6:13181400-13181800	Active TSS	Stomach Smooth Muscle	stomach
33	chr6:13181400-13182000	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:13181400-13182000	Active TSS	Brain Angular Gyrus	brain
35	chr6:13181400-13182000	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr6:13181400-13182000	Active TSS	Brain Cingulate Gyrus	brain
37	chr6:13181400-13182000	Enhancers	Fetal Stomach	stomach
38	chr6:13181400-13184600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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