Variant report

Variant	rs6924931
Chromosome Location	chr6:13179620-13179621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10456623	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10948523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1150608	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1150609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1150610	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1150611	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1223542	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1223556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1237055	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4273688	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60384263	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13153800-13184200	Weak transcription	Aorta	Aorta
2	chr6:13159200-13181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:13163600-13183400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:13164800-13183400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:13164800-13184400	Weak transcription	Pancreas	Pancrea
6	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:13174600-13180400	Weak transcription	Fetal Brain Female	brain
8	chr6:13176400-13183800	Weak transcription	Lung	lung
9	chr6:13176400-13191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:13176600-13181400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:13178200-13179800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:13178400-13184400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:13178600-13180400	Weak transcription	Brain Germinal Matrix	brain
14	chr6:13178600-13181400	Weak transcription	Brain Angular Gyrus	brain
15	chr6:13178600-13183800	Weak transcription	Fetal Heart	heart
16	chr6:13178800-13180800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:13178800-13181200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:13178800-13181400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:13178800-13182000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:13178800-13184000	Weak transcription	Right Ventricle	heart
21	chr6:13178800-13187200	Weak transcription	Spleen	Spleen
22	chr6:13178800-13191400	Weak transcription	Left Ventricle	heart
23	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:13179000-13180400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:13179000-13180600	Weak transcription	Brain Anterior Caudate	brain
26	chr6:13179000-13181200	Weak transcription	Brain Substantia Nigra	brain
27	chr6:13179000-13181400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:13179200-13180400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:13179200-13181400	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:13179200-13184800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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