Variant report

Variant	rs11506773
Chromosome Location	chr9:115873850-115873851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:115873687-115873991	A549	lung:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
2	POLR2A	chr9:115873427-115873857	Hela-S3	cervix:	n/a	n/a
3	ZNF143	chr9:115873809-115873992	K562	blood:	n/a	n/a
4	CTCF	chr9:115873842-115874376	A549	lung:	n/a	n/a
5	CTCF	chr9:115873763-115874162	GM12878	blood:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
6	PAX5	chr9:115873676-115874009	GM12878	blood:	n/a	n/a
7	RXRA	chr9:115873554-115873974	HepG2	liver:	n/a	chr9:115873888-115873908 chr9:115873822-115873842 chr9:115873827-115873834
8	CTCF	chr9:115873706-115873974	Gliobla	brain:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
9	CTCF	chr9:115873686-115874068	LNCaP	prostate:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
10	CTCF	chr9:115873676-115874018	MCF-7	breast:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
11	TCF12	chr9:115873699-115873920	GM12878	blood:	n/a	n/a
12	CTCF	chr9:115873682-115873994	Fibrobl	skin:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
13	CTCF	chr9:115873650-115874028	GM12892	blood:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
14	CTCF	chr9:115873700-115874001	A549	lung:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
15	MYC	chr9:115873693-115873903	K562	blood:	n/a	n/a
16	FOXM1	chr9:115873646-115874094	GM12878	blood:	n/a	n/a
17	POLR2A	chr9:115873553-115874107	GM12892	blood:	n/a	n/a
18	RAD21	chr9:115873837-115874115	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr9:115873700-115874010	ProgFib	skin:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
20	TCF3	chr9:115873664-115874008	GM12878	blood:	n/a	n/a
21	SMC3	chr9:115873790-115874008	GM12878	blood:	n/a	chr9:115873826-115873840
22	CTCF	chr9:115873568-115874077	A549	lung:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
23	CTCF	chr9:115873688-115874036	Lung_OC	lung:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
24	CTCF	chr9:115873677-115874062	Spleen_OC	spleen:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
25	CTCF	chr9:115873767-115874103	IMR90	lung:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
26	TCF12	chr9:115873715-115874003	GM12878	blood:	n/a	n/a
27	ZNF143	chr9:115873779-115874005	GM12878	blood:	n/a	n/a
28	CTCF	chr9:115873668-115874022	MCF-7	breast:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
29	POU2F2	chr9:115873679-115873981	GM12878	blood:	n/a	n/a
30	MYC	chr9:115873795-115873925	GM12878	blood:	n/a	n/a
31	CTCF	chr9:115873701-115874036	GM20000	blood:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
32	ZNF143	chr9:115873799-115873970	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTCF	chr9:115873671-115874030	K562	blood:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
34	MYC	chr9:115873730-115873893	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr9:115873628-115873977	GM12878	blood:	n/a	n/a
36	CTCF	chr9:115873850-115874104	HepG2	liver:	n/a	n/a
37	RAD21	chr9:115873769-115874040	H1-hESC	embryonic stem cell:	n/a	chr9:115873825-115873838 chr9:115873822-115873841 chr9:115873826-115873840
38	POLR2A	chr9:115873633-115873963	GM12878	blood:	n/a	n/a
39	CTCF	chr9:115873699-115874047	GM10248	blood:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
40	PAX5	chr9:115873669-115874084	GM12878	blood:	n/a	n/a
41	CTCF	chr9:115873846-115875286	SK-N-SH	brain:	n/a	n/a
42	CTCF	chr9:115873690-115874039	Pancreas_OC	pancreas:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
43	CTCF	chr9:115873354-115874079	K562	blood:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
44	POLR2A	chr9:115873278-115873876	MCF-7	breast:	n/a	n/a
45	CTCF	chr9:115873328-115874084	K562	blood:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
46	CTCF	chr9:115873676-115874059	Medullo	brain:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
47	CTCF	chr9:115873695-115874047	GM13977	blood:	n/a	chr9:115873826-115873839 chr9:115873826-115873839 chr9:115873825-115873841 chr9:115873824-115873842
48	ZBTB33	chr9:115873586-115873978	K562	blood:	n/a	n/a
49	BATF	chr9:115873657-115873969	GM12878	blood:	n/a	n/a
50	JUND	chr9:115873745-115873894	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:115872624..115875532-chr9:115912017..115913734,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP37-2	chr9:115873690-115873957	NONHSAT134034

Variant related genes	Relation type
FAM225B	TF binding region
FAM225A	TF binding region
ENSG00000136867	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10981631	0.84[ASN][1000 genomes]
rs10981637	0.85[ASN][1000 genomes]
rs12347767	0.86[ASN][1000 genomes]
rs17828145	0.90[ASN][1000 genomes]
rs41280203	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1047000	chr9:115610445-115884038	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv831691	chr9:115754699-115929459	Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv825051	chr9:115811606-115882022	ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv825052	chr9:115811634-115882048	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv893734	chr9:115815398-115891009	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv2757353	chr9:115815398-115892245	ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv2753302	chr9:115819870-115888112	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
11	nsv893735	chr9:115821854-115891009	ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv2421517	chr9:115852715-115874994	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv893736	chr9:115852715-115891009	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv893737	chr9:115852715-115893229	Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv893738	chr9:115852715-115894240	Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1046217	chr9:115854339-115881588	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1042807	chr9:115854339-115883741	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv1040513	chr9:115854339-115885060	Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv442164	chr9:115854351-115883753	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	esv2761253	chr9:115854351-115885060	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv893739	chr9:115859223-115891009	Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
22	nsv893740	chr9:115860251-115891009	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
23	nsv893741	chr9:115862518-115891009	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv893742	chr9:115867276-115910991	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
25	nsv893743	chr9:115867276-115917783	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
26	nsv982338	chr9:115868388-115874153	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115861600-115874000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:115867400-115874000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:115867600-115874000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:115873800-115874000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:115873800-115874000	Active TSS	Adipose Nuclei	Adipose
6	chr9:115873800-115874000	Enhancers	Osteobl	bone

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