Variant report

Variant	rs1150678
Chromosome Location	chr6:28142276-28142277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1071893	0.89[EUR][1000 genomes]
rs1150666	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12173797	0.86[EUR][1000 genomes]
rs1225592	0.92[EUR][1000 genomes]
rs1225595	0.92[EUR][1000 genomes]
rs1225716	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1233691	0.92[EUR][1000 genomes]
rs1233708	0.85[EUR][1000 genomes]
rs149955	0.95[EUR][1000 genomes]
rs149958	0.86[EUR][1000 genomes]
rs149959	0.86[EUR][1000 genomes]
rs149962	0.86[EUR][1000 genomes]
rs149965	0.86[EUR][1000 genomes]
rs156738	0.86[EUR][1000 genomes]
rs156739	0.86[EUR][1000 genomes]
rs1631552	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1770131	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs183244	0.95[EUR][1000 genomes]
rs188105	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs203876	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs203877	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs203882	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs203883	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs203884	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs203892	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs203893	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2622319	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2791332	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs476167	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs536704	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9295760	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs1150678	AL022393.7	cis	Heart Left Ventricle	GTEx
rs1150678	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs1150678	ZSCAN31	cis	Thyroid	GTEx
rs1150678	RP1-265C24.9	cis	Heart Left Ventricle	GTEx
rs1150678	RP1-265C24.5	cis	Muscle Skeletal	GTEx
rs1150678	AL022393.7	cis	Artery Tibial	GTEx
rs1150678	OR1F12	cis	Thyroid	GTEx
rs1150678	AL022393.7	cis	Nerve Tibial	GTEx
rs1150678	AL022393.7	cis	Muscle Skeletal	GTEx
rs1150678	OR2B8P	cis	Thyroid	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28129800-28145400	Weak transcription	Brain Angular Gyrus	brain
2	chr6:28130000-28142600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:28130200-28142800	Weak transcription	Left Ventricle	heart
4	chr6:28130400-28142600	Weak transcription	Psoas Muscle	Psoas
5	chr6:28138000-28145600	Weak transcription	K562	blood
6	chr6:28139000-28144400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:28139400-28145600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:28140200-28142400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:28140800-28142400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:28141000-28143200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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