Variant report

Variant	rs9295760
Chromosome Location	chr6:28147385-28147386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:26032523..26035435-chr6:28146872..28148690,2	K562	blood:
2	chr6:28145972..28147605-chr6:28169544..28171474,2	K562	blood:
3	chr6:28136271..28138102-chr6:28146018..28148552,2	K562	blood:
4	chr6:28146868..28149346-chr6:28150403..28152659,2	K562	blood:

Variant related genes	Relation type
ENSG00000137259	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1071893	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1150666	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1150678	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12173797	0.86[EUR][1000 genomes]
rs12174753	0.84[CEU][hapmap]
rs1225592	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1225595	0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1225599	0.84[CEU][hapmap]
rs1225716	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233691	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1233708	0.94[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1340004	0.84[CEU][hapmap]
rs149897	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs149900	0.84[CEU][hapmap]
rs149942	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs149944	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs149945	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs149955	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs149958	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs149959	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs149961	0.84[CEU][hapmap]
rs149962	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs149965	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs149969	0.84[CEU][hapmap]
rs149970	0.84[CEU][hapmap];0.80[CHB][hapmap]
rs149972	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs149989	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs156738	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs156739	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1631552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16893666	0.84[CEU][hapmap]
rs172166	0.83[CEU][hapmap]
rs1770131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17711344	0.84[CEU][hapmap]
rs17711801	0.89[CEU][hapmap]
rs17774663	0.84[CEU][hapmap]
rs183244	0.89[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1853097	0.84[CEU][hapmap]
rs188105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1904840	0.84[CEU][hapmap]
rs1947862	0.84[CEU][hapmap]
rs203876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs203882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203883	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203890	0.84[CEU][hapmap]
rs203892	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275508	0.84[CEU][hapmap]
rs2281588	0.84[CEU][hapmap]
rs2295594	0.84[CEU][hapmap]
rs2622319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2791332	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3173443	0.84[CEU][hapmap]
rs3734573	0.84[CEU][hapmap]
rs3823180	0.84[CEU][hapmap]
rs4711165	0.84[CEU][hapmap]
rs4713135	0.84[CEU][hapmap]
rs4713137	0.84[CEU][hapmap]
rs4713142	0.84[CEU][hapmap]
rs4713143	0.84[CEU][hapmap]
rs4713144	0.89[CEU][hapmap]
rs4713145	0.84[CEU][hapmap]
rs4713148	0.84[CEU][hapmap]
rs4713152	0.84[CEU][hapmap]
rs476167	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs536704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6922063	0.84[CEU][hapmap]
rs6931858	0.84[CEU][hapmap]
rs6932109	0.84[CEU][hapmap]
rs6941992	0.84[CEU][hapmap]
rs7755442	0.89[CEU][hapmap]
rs868987	0.84[CEU][hapmap]
rs9283884	0.84[CEU][hapmap]
rs9295758	0.84[CEU][hapmap]
rs9295759	0.89[CEU][hapmap]
rs9295761	0.84[CEU][hapmap]
rs9348793	0.84[CEU][hapmap]
rs9348794	0.84[CEU][hapmap]
rs9348796	0.84[CEU][hapmap]
rs9368553	0.81[CEU][hapmap]
rs9368554	0.84[CEU][hapmap]
rs9368555	0.84[CEU][hapmap]
rs9380047	0.84[CEU][hapmap]
rs9380052	0.84[CEU][hapmap]
rs9380055	0.84[CEU][hapmap]
rs9380057	0.84[CEU][hapmap]
rs9380059	0.84[CEU][hapmap]
rs9380062	0.84[CEU][hapmap]
rs9393881	0.84[CEU][hapmap]
rs9393890	0.84[CEU][hapmap]
rs9393893	0.84[CEU][hapmap]
rs9393897	0.84[CEU][hapmap]
rs9393901	0.83[CEU][hapmap]
rs9461433	0.84[CEU][hapmap]
rs9461443	0.84[CEU][hapmap]
rs9468274	0.84[CEU][hapmap]
rs9468286	0.84[CEU][hapmap]

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs9295760	OR2B8P	cis	Thyroid	GTEx
rs9295760	RP1-265C24.9	cis	Heart Left Ventricle	GTEx
rs9295760	ZNF323	cis	Temporal Cortex	GTEx
rs9295760	AL022393.7	cis	Artery Tibial	GTEx
rs9295760	OR1F12	cis	Thyroid	GTEx
rs9295760	ZNF323	cis	Brain Pons	GTEx
rs9295760	ZNF323	cis	Frontal Cortex	GTEx
rs9295760	ZNF323	cis	Cerebellum	GTEx
rs9295760	AL022393.7	cis	Nerve Tibial	GTEx
rs9295760	AL022393.7	cis	Muscle Skeletal	GTEx
rs9295760	ZSCAN31	cis	Thyroid	GTEx
rs9295760	AL022393.7	cis	Heart Left Ventricle	GTEx
rs9295760	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs9295760	RP1-265C24.5	cis	Muscle Skeletal	GTEx

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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