Variant report

Variant	rs9468274
Chromosome Location	chr6:28026077-28026078
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr6:28025935-28026134	HepG2	liver:	n/a	chr6:28026007-28026016 chr6:28026003-28026016
2	JUND	chr6:28025947-28026173	HepG2	liver:	n/a	chr6:28026007-28026016

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28024391..28026984-chr6:28098604..28100531,2	MCF-7	breast:

Variant related genes	Relation type
OR2B8P	TF binding region

Extended variants
information (count: 185 )
Associated
traits (count: 25 )

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs1150666	0.87[ASW][hapmap];0.82[YRI][hapmap]
rs1150689	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1150696	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs11552219	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12174753	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1225598	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1225599	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs12332979	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1233699	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1233701	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1233704	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1233705	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1233707	0.81[ASN][1000 genomes]
rs1237875	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1340004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs149897	0.94[ASW][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap]
rs149899	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs149900	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs149942	0.94[ASW][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap]
rs149944	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs149945	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs149946	0.82[EUR][1000 genomes]
rs149947	0.82[EUR][1000 genomes]
rs149955	0.81[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs149958	0.84[AFR][1000 genomes]
rs149959	0.81[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs149961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149962	0.83[AFR][1000 genomes]
rs149964	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149968	0.84[EUR][1000 genomes]
rs149969	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs149970	0.88[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs149972	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs149989	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs156738	0.84[AFR][1000 genomes]
rs156739	0.81[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs156744	0.82[EUR][1000 genomes]
rs1631552	0.87[ASW][hapmap];0.90[YRI][hapmap]
rs16893666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs172166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs175954	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1770131	0.90[YRI][hapmap]
rs17711344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17711801	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17774663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs183244	0.81[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1853097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs188105	0.89[YRI][hapmap]
rs1904840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1904841	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1947862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1947863	0.81[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs200969	0.95[CEU][hapmap]
rs203876	0.87[ASW][hapmap];0.90[YRI][hapmap]
rs203877	0.87[ASW][hapmap];0.90[YRI][hapmap]
rs203882	0.90[YRI][hapmap]
rs203884	0.87[ASW][hapmap];0.90[YRI][hapmap]
rs203890	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203893	0.87[ASW][hapmap];0.90[YRI][hapmap]
rs2116981	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2116984	0.80[YRI][hapmap]
rs2273564	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2275508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2281588	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2295594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2622319	0.82[YRI][hapmap]
rs3173443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34131763	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34466819	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34716816	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35193936	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35227624	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35512245	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36078605	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3734573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3757187	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3823180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4711164	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4711165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713141	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713146	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713150	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713151	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4713152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs536704	0.81[CEU][hapmap];0.89[YRI][hapmap]
rs56310871	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56364346	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs573179	0.95[CEU][hapmap]
rs61471148	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66529373	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67878650	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6901017	0.81[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs6922063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6931858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6932109	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6934769	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6941992	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7739216	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7755442	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs868987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9283884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9295758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9295759	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9295760	0.84[CEU][hapmap]
rs9295761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9295762	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9348789	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348793	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348794	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348796	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348797	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357060	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357061	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357062	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357063	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357065	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357066	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9366715	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368549	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9368550	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368551	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368552	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368553	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368556	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368557	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368558	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368560	0.90[CEU][hapmap]
rs9380045	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380049	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380050	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380052	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380054	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380055	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380056	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380058	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380060	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380061	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380062	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380063	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380065	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380067	0.81[ASN][1000 genomes]
rs9393881	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393884	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393885	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393886	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393887	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393888	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393891	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393892	0.81[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393894	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393895	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9393896	0.81[ASN][1000 genomes]
rs9393897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393898	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9393899	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9393901	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9461433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468271	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468277	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468278	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468290	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468292	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468295	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468296	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468297	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468298	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv883513	chr6:27982152-28033087	Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv966688	chr6:28019147-28028399	Bivalent Enhancer	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:25)

SNP	Gene	Cis/trans	Tissue	Source
rs9468274	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs9468274	AL022393.7	cis	Muscle Skeletal	GTEx
rs9468274	RP1-265C24.5	cis	Heart Left Ventricle	GTEx
rs9468274	NKAPL	cis	parietal	SCAN
rs9468274	OR2B7P	cis	Thyroid	GTEx
rs9468274	HIST1H2AI	cis	parietal	SCAN
rs9468274	ZSCAN23	cis	parietal	SCAN
rs9468274	RP1-265C24.5	cis	Muscle Skeletal	GTEx
rs9468274	ZNF323	cis	parietal	SCAN
rs9468274	OR2B8P	cis	Skin Sun Exposed Lower leg	GTEx
rs9468274	BTN2A1	cis	cerebellum	SCAN
rs9468274	ZNF204P	cis	parietal	SCAN
rs9468274	OR2B8P	cis	Thyroid	GTEx
rs9468274	ZNF192	cis	parietal	SCAN
rs9468274	ZSCAN23	cis	cerebellum	SCAN
rs9468274	HIST1H2BC	cis	parietal	SCAN
rs9468274	ZNF187	cis	parietal	SCAN
rs9468274	BTN2A1	cis	parietal	SCAN
rs9468274	ZNF323	cis	cerebellum	SCAN
rs9468274	ZNF187	cis	cerebellum	SCAN
rs9468274	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs9468274	ZKSCAN3	cis	parietal	SCAN
rs9468274	LRRC16A	cis	parietal	SCAN
rs9468274	ZNF192	cis	cerebellum	SCAN
rs9468274	AL022393.7	cis	Nerve Tibial	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links