Variant report

Variant	rs9468278
Chromosome Location	chr6:28028482-28028483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 158 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs1150689	0.81[ASN][1000 genomes]
rs11552219	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12174753	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1225598	0.81[ASN][1000 genomes]
rs1225599	0.81[ASN][1000 genomes]
rs12332979	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1233699	0.81[ASN][1000 genomes]
rs1233701	0.81[ASN][1000 genomes]
rs1233704	0.81[ASN][1000 genomes]
rs1233705	0.81[ASN][1000 genomes]
rs1233707	0.81[ASN][1000 genomes]
rs1237875	0.81[ASN][1000 genomes]
rs1340004	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs149899	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs149946	0.82[EUR][1000 genomes]
rs149947	0.82[EUR][1000 genomes]
rs149955	0.88[AFR][1000 genomes]
rs149958	0.86[AFR][1000 genomes]
rs149959	0.84[AFR][1000 genomes]
rs149961	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149962	0.85[AFR][1000 genomes]
rs149964	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149968	0.84[EUR][1000 genomes]
rs149969	0.84[EUR][1000 genomes]
rs156738	0.86[AFR][1000 genomes]
rs156739	0.86[AFR][1000 genomes]
rs156744	0.82[EUR][1000 genomes]
rs16893666	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs172166	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs175954	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17711344	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17711801	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17774663	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs183244	0.88[AFR][1000 genomes]
rs1853097	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1904840	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1904841	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1947862	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1947863	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs203890	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2116981	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2273564	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2275508	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2281588	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2295594	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3173443	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34131763	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34466819	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34716816	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35193936	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35227624	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35512245	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36078605	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3734573	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3757187	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3823180	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4711164	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4711165	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713135	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713137	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713141	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713142	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713143	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713144	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713145	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713146	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713148	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713150	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713151	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4713152	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56310871	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56364346	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61471148	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66529373	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67878650	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6922063	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6931858	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6932109	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6934769	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6941992	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7739216	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7755442	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs868987	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9283884	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9295758	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9295759	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9295761	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9295762	0.81[ASN][1000 genomes]
rs9348789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348793	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348794	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348796	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348797	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357061	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357062	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357063	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357065	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357066	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9366715	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368549	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9368550	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368551	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368552	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368553	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368554	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368555	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368556	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368557	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368558	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380045	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380047	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380049	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380050	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380052	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380054	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380055	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380056	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380057	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380058	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380059	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380060	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380061	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380062	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380063	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380065	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380067	0.81[ASN][1000 genomes]
rs9393881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393884	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393885	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393886	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393887	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393888	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393890	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393891	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393892	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393893	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393894	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393895	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9393896	0.81[ASN][1000 genomes]
rs9393897	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393898	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9393899	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9393901	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9461433	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468274	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468286	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468290	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468292	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468295	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468296	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468297	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468298	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv883513	chr6:27982152-28033087	Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs9468278	AL022393.7	cis	Muscle Skeletal	GTEx
rs9468278	RP1-265C24.5	cis	Muscle Skeletal	GTEx
rs9468278	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs9468278	OR2B7P	cis	Thyroid	GTEx
rs9468278	OR2B8P	cis	Thyroid	GTEx
rs9468278	OR2B8P	cis	Skin Sun Exposed Lower leg	GTEx
rs9468278	RP1-265C24.5	cis	Heart Left Ventricle	GTEx
rs9468278	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs9468278	AL022393.7	cis	Nerve Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28028200-28028800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:28028400-28028600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

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