Variant report

Variant	rs9393888
Chromosome Location	chr6:28059217-28059218
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:28058461-28059270	U87	brain:	n/a	n/a
2	MXI1	chr6:28058448-28059996	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr6:28057384-28059244	HepG2	liver:	n/a	n/a
4	POLR2A	chr6:28059072-28059263	MCF-7	breast:	n/a	n/a
5	POLR2A	chr6:28058461-28059324	U87	brain:	n/a	n/a
6	CTCF	chr6:28059080-28059230	WERI-Rb-1	eye:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:28059208-28059258	HRPEpiC	eye:	n/a
2	chr6:28059208-28059258	GM12878	blood:	n/a
3	chr6:28059208-28059258	RPTEC	kidney:	n/a
4	chr6:28059208-28059258	NB4	blood:	n/a
5	chr6:28059208-28059258	HepG2	liver:	n/a
6	chr6:28059208-28059258	NT2-D1	testis:	n/a
7	chr6:28059208-28059258	T-47D	breast:	n/a
8	chr6:28059208-28059258	ProgFib	skin:	n/a
9	chr6:28059208-28059258	HPAEpiC	pulmonary alveolar:	n/a
10	chr6:28059208-28059258	CMK	blood:	n/a
11	chr6:28059208-28059258	Hepatocyte	liver:	n/a
12	chr6:28059208-28059258	AG09319	gingival:	n/a
13	chr6:28059208-28059258	GM12891	blood:	n/a
14	chr6:28059208-28059258	SAEC	small airway:	n/a
15	chr6:28059208-28059258	Jurkat	blood:	n/a
16	chr6:28059208-28059258	K562	blood:	n/a
17	chr6:28059208-28059258	HRE	kidney:	n/a
18	chr6:28059208-28059258	SK-N-SH	brain:	n/a
19	chr6:28059208-28059258	HCT-116	colon:	n/a
20	chr6:28059208-28059258	HUVEC	blood vessel:	n/a
21	chr6:28059208-28059258	GM19239	blood:	n/a
22	chr6:28059208-28059258	Caco-2	colon:	n/a
23	chr6:28059208-28059258	NHBE	bronchial:	n/a
24	chr6:28059208-28059258	GM12892	blood:	n/a
25	chr6:28059208-28059258	BJ	skin:	n/a
26	chr6:28059208-28059258	A549	lung:	n/a
27	chr6:28059208-28059258	HNPCEpiC	eye:	n/a
28	chr6:28059208-28059258	HCPEpiC	choroid plexus:	n/a
29	chr6:28059208-28059258	AG09309	skin:	n/a
30	chr6:28059208-28059258	NH-A	brain:	n/a
31	chr6:28059208-28059258	HEEpiC	esophagus:	n/a
32	chr6:28059208-28059258	MCF-7	breast:	n/a
33	chr6:28059208-28059258	AG10803	skin:	n/a
34	chr6:28059208-28059258	BE2_C	brain:	n/a
35	chr6:28059208-28059258	HCM	heart:	n/a
36	chr6:28059208-28059258	SKMC	muscle:	n/a
37	chr6:28059208-28059258	PrEC	prostate:	n/a
38	chr6:28059208-28059258	SK-N-MC	brain:	n/a
39	chr6:28059208-28059258	HIPEpiC	eye:	n/a
40	chr6:28059208-28059258	SK-N-SH_RA	brain:	n/a
41	chr6:28059208-28059258	PFSK-1	brain:	n/a
42	chr6:28059208-28059258	HMEC	breast:	n/a
43	chr6:28059208-28059258	HAEpiC	amniotic membrane:	n/a
44	chr6:28059208-28059258	Hela-S3	cervix:	n/a
45	chr6:28059208-28059258	HCF	heart:	n/a
46	chr6:28059208-28059258	PANC-1	pancreas:	n/a
47	chr6:28059208-28059258	GM06990	blood:	n/a
48	chr6:28059208-28059258	HRCEpiC	kidney:	n/a
49	chr6:28059208-28059258	H1-hESC	embryonic stem cell:	embryo
50	chr6:28059208-28059258	U87	brain:	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF165-1	chr6:28058585-28059262	NONHSAT108425
2	lnc-ZKSCAN4-1	chr6:28058878-28059246	NONHSAT108426

No data

Variant related genes	Relation type
ZSCAN12P1	TF binding region
ZSCAN12P1	CpG island

Extended variants
information (count: 151 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs1150689	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1150692	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1150693	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1150696	0.82[ASN][1000 genomes]
rs11552219	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12174753	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225598	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1225599	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12332979	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233697	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233699	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233701	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233704	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233705	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233707	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1237875	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1340004	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149899	0.83[ASN][1000 genomes]
rs149961	0.80[ASN][1000 genomes]
rs149964	0.80[ASN][1000 genomes]
rs16893666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs172166	0.83[ASN][1000 genomes]
rs17711344	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17711801	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17774663	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904840	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904841	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1947862	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947863	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203890	0.80[ASN][1000 genomes]
rs2116981	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2273564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275508	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2281588	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2295594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3173443	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34131763	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34466819	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34716816	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35193936	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35227624	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35512245	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35576511	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36078605	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757187	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823180	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711164	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711165	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713135	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713137	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713141	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713142	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713143	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713144	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713145	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713146	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713148	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713150	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713151	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713152	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56310871	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61471148	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67162726	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67878650	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6901017	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6905522	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922063	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6931858	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932109	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6934769	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941992	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739216	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7755442	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868987	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9283884	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295758	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295759	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295761	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295762	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9348789	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348793	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348794	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348796	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348797	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357060	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357062	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9357063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357065	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357066	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368549	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368551	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368552	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368553	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368554	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368555	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368556	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368557	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368558	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380045	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380047	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380050	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380054	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380055	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380056	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380057	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380058	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380059	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380060	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380061	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380062	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380063	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380065	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380067	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393881	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393884	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393885	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393886	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393887	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393891	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393892	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393893	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393894	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393895	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393896	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393897	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393898	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393899	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393901	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9461433	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468271	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468274	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468275	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9468277	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468278	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468286	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468290	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468292	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468295	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9468296	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468297	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468298	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs9393888	ZNF192P1	cis	Thyroid	GTEx
rs9393888	AL022393.7	cis	Nerve Tibial	GTEx
rs9393888	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs9393888	RP1-265C24.5	cis	Heart Left Ventricle	GTEx
rs9393888	RP1-265C24.5	cis	Muscle Skeletal	GTEx
rs9393888	OR2B8P	cis	Thyroid	GTEx
rs9393888	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs9393888	AL022393.7	cis	Muscle Skeletal	GTEx
rs9393888	ZNF192P1	cis	Heart Left Ventricle	GTEx
rs9393888	RP1-265C24.5	cis	Esophagus Muscularis	GTEx
rs9393888	OR2B7P	cis	Thyroid	GTEx
rs9393888	ZNF165	cis	Nerve Tibial	GTEx

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28049600-28063000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:28050800-28061200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:28053400-28064600	Strong transcription	Placenta	Placenta
4	chr6:28055200-28059600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr6:28055400-28059400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
6	chr6:28055400-28059800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:28056200-28059400	Weak transcription	HepG2	liver
8	chr6:28057400-28059400	ZNF genes & repeats	Fetal Intestine Large	intestine
9	chr6:28057800-28060400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:28057800-28065800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:28058000-28060200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:28058000-28060400	Weak transcription	NHEK	skin
13	chr6:28058000-28060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:28058000-28064800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:28058200-28062200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:28058200-28062200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:28058200-28072200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:28058400-28059400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:28058400-28059400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:28058400-28059400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:28058400-28059400	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr6:28058400-28060800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:28058400-28061200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:28058600-28059400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:28058600-28059400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:28058600-28059400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:28058600-28059400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:28058600-28059400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:28058600-28059400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:28058600-28059400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:28058600-28059400	Active TSS	Brain Angular Gyrus	brain
32	chr6:28058600-28059400	Active TSS	Brain Anterior Caudate	brain
33	chr6:28058600-28059400	Active TSS	Brain Cingulate Gyrus	brain
34	chr6:28058600-28059400	Active TSS	Brain Germinal Matrix	brain
35	chr6:28058600-28059400	Active TSS	Brain Hippocampus Middle	brain
36	chr6:28058600-28059400	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr6:28058600-28059400	Active TSS	Brain Substantia Nigra	brain
38	chr6:28058600-28059400	ZNF genes & repeats	Fetal Intestine Small	intestine
39	chr6:28058600-28059400	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr6:28058600-28059400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
41	chr6:28058600-28059400	Active TSS	Left Ventricle	heart
42	chr6:28058600-28059400	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr6:28058600-28059400	Active TSS	Rectal Smooth Muscle	rectum
44	chr6:28058600-28059400	Active TSS	Right Atrium	heart
45	chr6:28058600-28059400	Active TSS	Right Ventricle	heart
46	chr6:28058600-28059400	Active TSS	Osteobl	bone
47	chr6:28058600-28059600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:28058600-28059600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:28058800-28059400	Bivalent/Poised TSS	Adipose Nuclei	Adipose
50	chr6:28058800-28059400	ZNF genes & repeats	Aorta	Aorta

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