Variant report

Variant	rs9357065
Chromosome Location	chr6:28129580-28129581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:282)
CpG islands
(count:61)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:282 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr6:28129490-28129785	Hela-S3	cervix:	n/a	n/a
2	TAF7	chr6:28129272-28129871	H1-hESC	embryonic stem cell:	n/a	n/a
3	MTA3	chr6:28129150-28129862	GM12878	blood:	n/a	n/a
4	POLR2A	chr6:28129207-28130008	GM19099	blood:	n/a	n/a
5	POLR2A	chr6:28129199-28129821	HEK293	kidney:	n/a	n/a
6	POLR2A	chr6:28129302-28129783	HepG2	liver:	n/a	n/a
7	GABPA	chr6:28129081-28130063	HL-60	blood:	n/a	n/a
8	POLR2A	chr6:28129328-28129835	GM12892	blood:	n/a	n/a
9	POLR2A	chr6:28129155-28129842	HepG2	liver:	n/a	n/a
10	POLR2A	chr6:28129068-28130016	HL-60	blood:	n/a	n/a
11	IRF1	chr6:28129394-28129731	K562	blood:	n/a	chr6:28129491-28129505
12	POLR2A	chr6:28129160-28129900	PFSK-1	brain:	n/a	n/a
13	POLR2A	chr6:28126889-28129797	HepG2	liver:	n/a	n/a
14	POLR2A	chr6:28129274-28129751	GM12878	blood:	n/a	n/a
15	MAX	chr6:28129281-28129777	H1-hESC	embryonic stem cell:	n/a	n/a
16	TEAD4	chr6:28129219-28129820	K562	blood:	n/a	chr6:28129677-28129686
17	TAF1	chr6:28129287-28129737	ECC-1	luminal epithelium:	n/a	n/a
18	TAF1	chr6:28129388-28129697	GM12878	blood:	n/a	n/a
19	RAD21	chr6:28129290-28129766	SK-N-SH_RA	brain:	n/a	chr6:28129694-28129706
20	POLR2A	chr6:28129112-28129876	GM12892	blood:	n/a	n/a
21	MXI1	chr6:28129304-28129779	H1-hESC	embryonic stem cell:	n/a	chr6:28129445-28129454
22	E2F4	chr6:28129398-28129616	MCF10A-Er-Src	breast:	n/a	chr6:28129490-28129500
23	E2F6	chr6:28129279-28129811	A549	lung:	n/a	chr6:28129490-28129500
24	POLR2A	chr6:28129217-28129795	HUVEC	blood vessel:	n/a	n/a
25	MAX	chr6:28129261-28129612	HepG2	liver:	n/a	n/a
26	CEBPB	chr6:28129291-28129662	Hela-S3	cervix:	n/a	n/a
27	TBP	chr6:28129511-28129642	HepG2	liver:	n/a	n/a
28	SPI1	chr6:28129334-28129727	HL-60	blood:	n/a	n/a
29	POLR2A	chr6:28129177-28129995	H1-hESC	embryonic stem cell:	n/a	n/a
30	SRF	chr6:28129351-28129753	GM12878	blood:	n/a	n/a
31	IRF1	chr6:28129297-28129780	K562	blood:	n/a	chr6:28129491-28129505
32	USF2	chr6:28129286-28130066	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr6:28129214-28129803	GM18951	blood:	n/a	n/a
34	POLR2A	chr6:28129278-28129829	GM10847	blood:	n/a	n/a
35	SPI1	chr6:28129384-28129674	GM12891	blood:	n/a	n/a
36	STAT5A	chr6:28129185-28129720	GM12878	blood:	n/a	chr6:28129503-28129523 chr6:28129374-28129381
37	ELF1	chr6:28129281-28129685	K562	blood:	n/a	chr6:28129518-28129531 chr6:28129521-28129530 chr6:28129520-28129531
38	ZMIZ1	chr6:28129381-28129705	K562	blood:	n/a	n/a
39	GABPA	chr6:28129302-28129862	MCF-7	breast:	n/a	n/a
40	POU2F2	chr6:28129352-28129845	GM12891	blood:	n/a	n/a
41	CEBPD	chr6:28129205-28129741	HepG2	liver:	n/a	n/a
42	POLR2A	chr6:28129286-28129797	H1-neurons	neurons:	n/a	n/a
43	POLR2A	chr6:28129175-28129881	SK-N-SH	brain:	n/a	n/a
44	MXI1	chr6:28129529-28129599	Hela-S3	cervix:	n/a	n/a
45	POLR2A	chr6:28129351-28129827	GM12892	blood:	n/a	n/a
46	GTF2F1	chr6:28129298-28129666	K562	blood:	n/a	n/a
47	HEY1	chr6:28129221-28129839	K562	blood:	n/a	n/a
48	SPI1	chr6:28129252-28129799	HL-60	blood:	n/a	n/a
49	HEY1	chr6:28129184-28129848	HepG2	liver:	n/a	n/a
50	SPI1	chr6:28129398-28129641	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:28129556-28129606	SAEC	small airway:	n/a
2	chr6:28129556-28129606	BE2_C	brain:	n/a
3	chr6:28129556-28129606	AoSMC	blood vessel:	n/a
4	chr6:28129556-28129606	PANC-1	pancreas:	n/a
5	chr6:28129556-28129606	HUVEC	blood vessel:	n/a
6	chr6:28129556-28129606	Caco-2	colon:	n/a
7	chr6:28129556-28129606	SK-N-SH_RA	brain:	n/a
8	chr6:28129556-28129606	HCT-116	colon:	n/a
9	chr6:28129556-28129606	MCF-7	breast:	n/a
10	chr6:28129556-28129606	Hela-S3	cervix:	n/a
11	chr6:28129556-28129606	CMK	blood:	n/a
12	chr6:28129556-28129606	HCM	heart:	n/a
13	chr6:28129556-28129606	AG09319	gingival:	n/a
14	chr6:28129556-28129606	HRE	kidney:	n/a
15	chr6:28129556-28129606	IMR90	lung:	fetal
16	chr6:28129556-28129606	NT2-D1	testis:	n/a
17	chr6:28129556-28129606	MCF10A-Er-Src	breast:	n/a
18	chr6:28129556-28129606	HCF	heart:	n/a
19	chr6:28129556-28129606	GM19239	blood:	n/a
20	chr6:28129556-28129606	HIPEpiC	eye:	n/a
21	chr6:28129556-28129606	HMEC	breast:	n/a
22	chr6:28129556-28129606	GM12878	blood:	n/a
23	chr6:28129556-28129606	NB4	blood:	n/a
24	chr6:28129556-28129606	T-47D	breast:	n/a
25	chr6:28129556-28129606	U87	brain:	n/a
26	chr6:28129556-28129606	GM06990	blood:	n/a
27	chr6:28129556-28129606	AG04449	skin:	fetal
28	chr6:28129556-28129606	A549	lung:	n/a
29	chr6:28129556-28129606	NH-A	brain:	n/a
30	chr6:28129556-28129606	PFSK-1	brain:	n/a
31	chr6:28129556-28129606	GM12892	blood:	n/a
32	chr6:28129556-28129606	HRPEpiC	eye:	n/a
33	chr6:28129556-28129606	HEEpiC	esophagus:	n/a
34	chr6:28129556-28129606	PrEC	prostate:	n/a
35	chr6:28129556-28129606	Jurkat	blood:	n/a
36	chr6:28129556-28129606	HNPCEpiC	eye:	n/a
37	chr6:28129556-28129606	SK-N-MC	brain:	n/a
38	chr6:28129556-28129606	SK-N-SH	brain:	n/a
39	chr6:28129556-28129606	NHDF-neo	bronchial:	n/a
40	chr6:28129556-28129606	Hepatocyte	liver:	n/a
41	chr6:28129556-28129606	HL-60	blood:	n/a
42	chr6:28129556-28129606	NHBE	bronchial:	n/a
43	chr6:28129556-28129606	K562	blood:	n/a
44	chr6:28129556-28129606	H1-hESC	embryonic stem cell:	embryo
45	chr6:28129556-28129606	HEK293	kidney:	embryo
46	chr6:28129556-28129606	HRCEpiC	kidney:	n/a
47	chr6:28129556-28129606	RPTEC	kidney:	n/a
48	chr6:28129556-28129606	HepG2	liver:	n/a
49	chr6:28129556-28129606	HAEpiC	amniotic membrane:	n/a
50	chr6:28129556-28129606	BJ	skin:	n/a

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28109577..28112061-chr6:28128257..28130394,3	MCF-7	breast:
2	chr17:73851685..73852659-chr6:28129475..28130353,2	Hela-S3	cervix:
3	chr6:28129539..28132293-chr6:28218155..28220468,2	K562	blood:
4	chr6:28126892..28131515-chr6:28301205..28304944,6	K562	blood:
5	chr6:27775710..27777880-chr6:28129434..28132036,2	K562	blood:
6	chr6:28127970..28130555-chr6:28316475..28318965,2	K562	blood:
7	chr6:28129397..28131360-chr6:28191862..28193480,2	K562	blood:
8	chr6:27857955..27860857-chr6:28129284..28131805,2	K562	blood:

No data

Variant related genes	Relation type
ZNF192P1	TF binding region
ZNF192P1	CpG island
ENSG00000197153	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000132471	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 147 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs1150689	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1150692	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1150693	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1150696	0.82[ASN][1000 genomes]
rs11552219	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12174753	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1225598	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1225599	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12332979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233697	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233699	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233701	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233704	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233705	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233707	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1237875	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1340004	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs149899	0.82[ASN][1000 genomes]
rs16893666	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs172166	0.82[ASN][1000 genomes]
rs17711344	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17711801	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17774663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1853097	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1947862	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1947863	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2116981	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2273564	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275508	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2281588	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2295594	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3173443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34131763	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34466819	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34716816	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35193936	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35227624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35512245	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35576511	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36078605	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3734573	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3757187	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3823180	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713135	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713137	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713141	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713142	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713144	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713145	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713146	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713152	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56310871	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56364346	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61471148	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67162726	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67878650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901017	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6905522	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922063	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6931858	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6932109	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6934769	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6941992	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739216	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7755442	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs868987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9283884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295762	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9348789	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9348793	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348796	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357060	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357061	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357062	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9357063	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366715	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368549	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368550	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368551	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368552	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368553	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368554	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368556	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368557	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380045	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380047	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380049	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380050	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380052	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380054	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380055	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380056	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380057	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380058	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380067	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393881	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9393884	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393885	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393886	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393887	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393888	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393890	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393891	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393892	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9393896	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393897	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9393898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461433	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468271	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468274	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468275	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468277	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468278	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468286	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468290	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468292	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468295	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9468296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs9357065	AL022393.7	cis	Nerve Tibial	GTEx
rs9357065	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs9357065	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs9357065	RP1-265C24.5	cis	Heart Left Ventricle	GTEx
rs9357065	RP1-265C24.5	cis	Esophagus Muscularis	GTEx
rs9357065	OR2B8P	cis	Skin Sun Exposed Lower leg	GTEx
rs9357065	ZNF165	cis	Nerve Tibial	GTEx
rs9357065	AL022393.7	cis	Heart Left Ventricle	GTEx
rs9357065	AL022393.7	cis	Muscle Skeletal	GTEx
rs9357065	OR2B8P	cis	Thyroid	GTEx
rs9357065	ZNF192P1	cis	Heart Left Ventricle	GTEx
rs9357065	ZNF192P1	cis	Thyroid	GTEx
rs9357065	OR2B7P	cis	Thyroid	GTEx
rs9357065	RP1-265C24.5	cis	Muscle Skeletal	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28123800-28129600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:28127000-28134200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:28128800-28129600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:28128800-28129800	Active TSS	Brain Germinal Matrix	brain
5	chr6:28128800-28130000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:28129000-28129600	Active TSS	Duodenum Mucosa	Duodenum
7	chr6:28129000-28129600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
8	chr6:28129000-28129800	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:28129000-28129800	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:28129000-28129800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:28129000-28129800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:28129000-28129800	Active TSS	NHEK	skin
13	chr6:28129000-28130000	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:28129000-28130000	Active TSS	H1 Cell Line	embryonic stem cell
15	chr6:28129000-28130000	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr6:28129000-28130000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr6:28129000-28130000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr6:28129000-28130000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:28129000-28130000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:28129000-28130000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:28129000-28130000	Active TSS	Fetal Intestine Large	intestine
22	chr6:28129000-28130000	Flanking Active TSS	Fetal Muscle Leg	muscle
23	chr6:28129000-28130000	Active TSS	A549	lung
24	chr6:28129000-28130000	Active TSS	HepG2	liver
25	chr6:28129000-28130000	Active TSS	HMEC	breast
26	chr6:28129000-28130200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr6:28129000-28130200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:28129000-28130200	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr6:28129000-28130200	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr6:28129000-28130200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:28129000-28130200	Active TSS	Fetal Brain Female	brain
32	chr6:28129000-28130200	Active TSS	Fetal Kidney	kidney
33	chr6:28129000-28130200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr6:28129000-28130400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:28129000-28130400	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr6:28129000-28130400	Active TSS	Psoas Muscle	Psoas
37	chr6:28129000-28130400	Active TSS	Rectal Mucosa Donor 29	rectum
38	chr6:28129000-28130600	Active TSS	GM12878-XiMat	blood
39	chr6:28129200-28129600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:28129200-28129600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr6:28129200-28129600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
42	chr6:28129200-28129600	Active TSS	Primary T cells from cord blood	blood
43	chr6:28129200-28129600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:28129200-28129600	Active TSS	Fetal Brain Male	brain
45	chr6:28129200-28129600	Active TSS	Gastric	stomach
46	chr6:28129200-28129600	Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr6:28129200-28129800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:28129200-28129800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:28129200-28129800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:28129200-28129800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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Variant report

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