Variant report

Variant	rs9393881
Chromosome Location	chr6:28023751-28023752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28023183..28024935-chr6:43739349..43741266,2	K562	blood:
2	chr6:28022204..28024125-chr6:28233468..28235109,2	MCF-7	breast:
3	chr6:27856950..27859637-chr6:28022500..28024631,2	K562	blood:
4	chr6:28022742..28025114-chr6:28059303..28061030,2	K562	blood:

Variant related genes	Relation type
ENSG00000197062	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000112715	Chromatin interaction
ENSG00000219891	Chromatin interaction

Extended variants
information (count: 186 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs1150666	0.87[ASW][hapmap]
rs1150689	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1150696	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs11552219	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12174753	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1225598	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1225599	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs12332979	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1233699	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1233701	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1233704	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1233705	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1233707	0.81[ASN][1000 genomes]
rs1237875	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1340004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs149897	0.94[ASW][hapmap];0.81[CHB][hapmap];0.96[YRI][hapmap]
rs149899	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs149900	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap]
rs149942	0.94[ASW][hapmap];0.81[CHB][hapmap];0.96[YRI][hapmap]
rs149944	0.81[CHB][hapmap];0.96[YRI][hapmap]
rs149945	0.81[CHB][hapmap];0.96[YRI][hapmap]
rs149946	0.82[EUR][1000 genomes]
rs149947	0.82[EUR][1000 genomes]
rs149955	0.81[CHB][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs149958	0.86[AFR][1000 genomes]
rs149959	0.81[CHB][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs149961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149962	0.85[AFR][1000 genomes]
rs149964	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149968	0.84[EUR][1000 genomes]
rs149969	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes]
rs149970	0.88[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs149972	0.81[CHB][hapmap];0.96[YRI][hapmap]
rs149989	0.81[CHB][hapmap];0.96[YRI][hapmap]
rs156738	0.86[AFR][1000 genomes]
rs156739	0.81[CHB][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs156744	0.82[EUR][1000 genomes]
rs1631552	0.87[ASW][hapmap];0.86[YRI][hapmap]
rs16893666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs172166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs175954	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1770131	0.86[YRI][hapmap]
rs17711344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17711801	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17774663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs183244	0.81[CHB][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs1853097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs188105	0.85[YRI][hapmap]
rs1904840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1904841	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1947862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1947863	0.81[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs200969	0.95[CEU][hapmap]
rs203876	0.87[ASW][hapmap];0.86[YRI][hapmap]
rs203877	0.87[ASW][hapmap];0.86[YRI][hapmap]
rs203882	0.86[YRI][hapmap]
rs203884	0.87[ASW][hapmap];0.86[YRI][hapmap]
rs203890	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203893	0.87[ASW][hapmap];0.86[YRI][hapmap]
rs2116981	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2273564	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2275508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2281588	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2295594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3173443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34131763	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34466819	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34716816	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35193936	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35227624	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35512245	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36078605	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3734573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3757187	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3823180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4711164	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4711165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713141	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713146	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4713150	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713151	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4713152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs536704	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs56310871	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56364346	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs573179	0.95[CEU][hapmap]
rs61471148	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66529373	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67878650	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6901017	0.81[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs6922063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6931858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6932109	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6934769	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6941992	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7739216	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7755442	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs868987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9283884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9295758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9295759	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9295760	0.84[CEU][hapmap]
rs9295761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9295762	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9348789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348793	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348794	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348796	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348797	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357061	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357062	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357063	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357065	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357066	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9366715	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368549	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9368550	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368551	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368552	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368553	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368556	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368557	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368558	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368560	0.90[CEU][hapmap]
rs9380045	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380049	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380050	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380052	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380054	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380055	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380056	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380058	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380060	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380061	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380062	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380063	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380065	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380067	0.81[ASN][1000 genomes]
rs9393884	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393885	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393886	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393887	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393888	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393891	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393892	0.81[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393894	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393895	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9393896	0.81[ASN][1000 genomes]
rs9393897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393898	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9393899	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9393901	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9461433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468274	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468290	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468292	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468295	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468296	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468297	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468298	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv883513	chr6:27982152-28033087	Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv981052	chr6:27987196-28024382	Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv966688	chr6:28019147-28028399	Bivalent Enhancer	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3390093	chr6:28022023-28024221	Inactive region	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv3436863	chr6:28022773-28024221	Inactive region	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs9393881	OR2B7P	cis	Thyroid	GTEx
rs9393881	BTN3A2	cis	multi-tissue	Pritchard
rs9393881		cis	Lymphoblastoid	GTEx
rs9393881	OR2B8P	cis	Skin Sun Exposed Lower leg	GTEx
rs9393881	RP1-265C24.5	cis	Heart Left Ventricle	GTEx
rs9393881	AL022393.7	cis	Muscle Skeletal	GTEx
rs9393881	RP1-265C24.5	cis	Muscle Skeletal	GTEx
rs9393881	AL022393.7	cis	Nerve Tibial	GTEx
rs9393881	OR2B8P	cis	Thyroid	GTEx

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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