Variant report

Variant	rs17711801
Chromosome Location	chr6:28092307-28092308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:299)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:299 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr6:28092069-28092751	GM12878	blood:	n/a	chr6:28092175-28092183 chr6:28092619-28092631 chr6:28092438-28092446
2	GABPA	chr6:28092224-28092682	GM12878	blood:	n/a	n/a
3	MAX	chr6:28092049-28092743	A549	lung:	n/a	chr6:28092631-28092641
4	YY1	chr6:28092204-28092456	HCT-116	colon:	n/a	n/a
5	EP300	chr6:28092250-28092573	HepG2	liver:	n/a	chr6:28092342-28092349
6	RAD21	chr6:28092067-28092567	Hela-S3	cervix:	n/a	n/a
7	PBX3	chr6:28092179-28092543	A549	lung:	n/a	n/a
8	MXI1	chr6:28091870-28093176	SK-N-SH	brain:	n/a	n/a
9	GABPA	chr6:28091834-28093012	MCF-7	breast:	n/a	n/a
10	POLR2A	chr6:28092185-28092331	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr6:28091952-28092669	U87	brain:	n/a	n/a
12	POLR2A	chr6:28091977-28093062	HL-60	blood:	n/a	n/a
13	POU2F2	chr6:28092193-28092706	GM12878	blood:	n/a	n/a
14	POLR2A	chr6:28092180-28092587	A549	lung:	n/a	n/a
15	SIN3AK20	chr6:28092162-28092525	PANC-1	pancreas:	n/a	n/a
16	TAF1	chr6:28092175-28092489	PFSK-1	brain:	n/a	n/a
17	CEBPD	chr6:28092109-28092605	HepG2	liver:	n/a	n/a
18	POLR2A	chr6:28092124-28092831	Hela-S3	cervix:	n/a	n/a
19	SIN3A	chr6:28092128-28092716	H1-hESC	embryonic stem cell:	n/a	chr6:28092361-28092372
20	POLR2A	chr6:28092131-28092791	MCF-7	breast:	n/a	n/a
21	POLR2A	chr6:28091409-28092994	PFSK-1	brain:	n/a	n/a
22	SMC3	chr6:28092118-28092672	Hela-S3	cervix:	n/a	n/a
23	POLR2A	chr6:28091882-28092773	PANC-1	pancreas:	n/a	n/a
24	CREB1	chr6:28092193-28092517	A549	lung:	n/a	n/a
25	TAF1	chr6:28092177-28092527	GM12891	blood:	n/a	n/a
26	POLR2A	chr6:28092195-28092671	K562	blood:	n/a	n/a
27	NFIC	chr6:28091983-28092601	HepG2	liver:	n/a	n/a
28	POLR2A	chr6:28092070-28092859	GM12878	blood:	n/a	n/a
29	CTCF	chr6:28092260-28092410	SK-N-SH_RA	brain:	n/a	n/a
30	FOS	chr6:28092265-28092453	MCF10A-Er-Src	breast:	n/a	n/a
31	MXI1	chr6:28092165-28092637	Hela-S3	cervix:	n/a	n/a
32	RUNX3	chr6:28092048-28092802	GM12878	blood:	n/a	n/a
33	GABPA	chr6:28092168-28092778	Hela-S3	cervix:	n/a	n/a
34	RAD21	chr6:28092167-28092517	SK-N-SH_RA	brain:	n/a	n/a
35	ELF1	chr6:28092097-28092748	HepG2	liver:	n/a	chr6:28092340-28092349 chr6:28092339-28092350
36	SP2	chr6:28092070-28092740	H1-hESC	embryonic stem cell:	n/a	n/a
37	MAX	chr6:28092068-28092692	SK-N-SH	brain:	n/a	chr6:28092631-28092641
38	KAP1	chr6:28092288-28092556	U2OS	brain:	n/a	n/a
39	RAD21	chr6:28092239-28092542	HepG2	liver:	n/a	n/a
40	NFYB	chr6:28092195-28092584	GM12878	blood:	n/a	chr6:28092371-28092386
41	ELF1	chr6:28091928-28092966	MCF-7	breast:	n/a	chr6:28092340-28092349 chr6:28092339-28092350
42	FOS	chr6:28092214-28092414	MCF10A-Er-Src	breast:	n/a	n/a
43	ZNF143	chr6:28092144-28092685	H1-hESC	embryonic stem cell:	n/a	n/a
44	MYBL2	chr6:28091950-28092840	HepG2	liver:	n/a	n/a
45	PML	chr6:28092121-28092704	MCF-7	breast:	n/a	chr6:28092654-28092662
46	MTA3	chr6:28091891-28092927	GM12878	blood:	n/a	n/a
47	SP2	chr6:28092013-28092765	H1-hESC	embryonic stem cell:	n/a	n/a
48	TCF3	chr6:28092205-28092704	GM12878	blood:	n/a	chr6:28092427-28092442
49	ELK1	chr6:28092119-28092668	Hela-S3	cervix:	n/a	n/a
50	SPI1	chr6:28092234-28092517	GM12891	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:28092269-28092319	LNCaP	prostate:	n/a
2	chr6:28092269-28092319	HAEpiC	amniotic membrane:	n/a
3	chr6:28092269-28092319	HEEpiC	esophagus:	n/a
4	chr6:28092269-28092319	SK-N-SH	brain:	n/a
5	chr6:28092269-28092319	SAEC	small airway:	n/a
6	chr6:28092269-28092319	SK-N-MC	brain:	n/a
7	chr6:28092269-28092319	ECC-1	luminal epithelium:	n/a
8	chr6:28092269-28092319	HRPEpiC	eye:	n/a
9	chr6:28092269-28092319	HPAEpiC	pulmonary alveolar:	n/a
10	chr6:28092269-28092319	HL-60	blood:	n/a
11	chr6:28092269-28092319	AG09319	gingival:	n/a
12	chr6:28092269-28092319	Caco-2	colon:	n/a
13	chr6:28092269-28092319	GM06990	blood:	n/a
14	chr6:28092269-28092319	HCPEpiC	choroid plexus:	n/a
15	chr6:28092269-28092319	PFSK-1	brain:	n/a
16	chr6:28092269-28092319	NB4	blood:	n/a
17	chr6:28092269-28092319	HRCEpiC	kidney:	n/a
18	chr6:28092269-28092319	HUVEC	blood vessel:	n/a
19	chr6:28092269-28092319	HEK293	kidney:	embryo
20	chr6:28092269-28092319	ProgFib	skin:	n/a
21	chr6:28092269-28092319	MCF10A-Er-Src	breast:	n/a
22	chr6:28092269-28092319	HRE	kidney:	n/a
23	chr6:28092269-28092319	U87	brain:	n/a
24	chr6:28092269-28092319	CMK	blood:	n/a
25	chr6:28092269-28092319	RPTEC	kidney:	n/a
26	chr6:28092269-28092319	H1-hESC	embryonic stem cell:	embryo
27	chr6:28092269-28092319	AG09309	skin:	n/a
28	chr6:28092269-28092319	AoSMC	blood vessel:	n/a
29	chr6:28092269-28092319	MCF-7	breast:	n/a
30	chr6:28092269-28092319	SKMC	muscle:	n/a
31	chr6:28092269-28092319	GM12891	blood:	n/a
32	chr6:28092269-28092319	HCT-116	colon:	n/a
33	chr6:28092269-28092319	AG10803	skin:	n/a
34	chr6:28092269-28092319	GM12878	blood:	n/a
35	chr6:28092269-28092319	K562	blood:	n/a
36	chr6:28092269-28092319	Jurkat	blood:	n/a
37	chr6:28092269-28092319	NH-A	brain:	n/a
38	chr6:28092269-28092319	T-47D	breast:	n/a
39	chr6:28092269-28092319	HMEC	breast:	n/a
40	chr6:28092269-28092319	BE2_C	brain:	n/a
41	chr6:28092269-28092319	AG04450	lung:	fetal
42	chr6:28092269-28092319	SK-N-SH_RA	brain:	n/a
43	chr6:28092269-28092319	NT2-D1	testis:	n/a
44	chr6:28092269-28092319	HCF	heart:	n/a
45	chr6:28092269-28092319	A549	lung:	n/a
46	chr6:28092269-28092319	AG04449	skin:	fetal
47	chr6:28092269-28092319	HNPCEpiC	eye:	n/a
48	chr6:28092269-28092319	PANC-1	pancreas:	n/a
49	chr6:28092269-28092319	NHDF-neo	bronchial:	n/a
50	chr6:28092269-28092319	ovcar-3	ovarian:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27858930..27860939-chr6:28090408..28092869,2	MCF-7	breast:
2	chr6:28091137..28098786-chr6:28103559..28111884,14	MCF-7	breast:
3	chr6:28092149..28093653-chr6:28108097..28109825,2	MCF-7	breast:
4	chr6:28092067..28092954-chr6:28104224..28105168,3	MCF-7	breast:
5	chr6:28083288..28085321-chr6:28091167..28093208,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZSCAN16	TF binding region
ZSCAN16	CpG island
ENSG00000198315	Chromatin interaction
ENSG00000261839	Chromatin interaction
ENSG00000219392	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000269293	Chromatin interaction

Extended variants
information (count: 180 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs1150666	0.80[CEU][hapmap]
rs1150689	0.90[CEU][hapmap];0.88[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1150692	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1150693	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1150696	0.81[CEU][hapmap];0.82[ASN][1000 genomes]
rs11552219	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12174753	0.95[CEU][hapmap];0.93[CHB][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225598	0.90[CEU][hapmap];0.88[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1225599	0.95[CEU][hapmap];0.88[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1225716	0.86[CEU][hapmap]
rs12332979	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233691	0.82[CEU][hapmap]
rs1233697	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233699	0.90[CEU][hapmap];0.87[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233701	0.90[CEU][hapmap];0.87[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233704	0.90[CEU][hapmap];0.87[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233705	0.90[CEU][hapmap];0.88[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233707	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233708	0.81[CEU][hapmap]
rs1237875	0.90[CEU][hapmap];0.87[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1340004	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149897	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs149899	0.83[ASN][1000 genomes]
rs149900	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs149942	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs149944	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs149945	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs149955	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs149959	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs149961	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs149964	0.80[ASN][1000 genomes]
rs149969	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs149970	0.95[CEU][hapmap];0.93[CHB][hapmap]
rs149972	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs149989	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs156739	0.86[CEU][hapmap];0.83[CHB][hapmap]
rs1631552	0.86[CEU][hapmap]
rs16893666	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs172166	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1770131	0.86[CEU][hapmap]
rs17711344	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17774663	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs183244	0.86[CEU][hapmap];0.82[CHB][hapmap]
rs1853097	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs188105	0.86[CEU][hapmap]
rs1904840	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904841	1.00[CHB][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1947862	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947863	0.94[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203876	0.86[CEU][hapmap]
rs203877	0.86[CEU][hapmap]
rs203882	0.86[CEU][hapmap]
rs203884	0.86[CEU][hapmap]
rs203890	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs203893	0.86[CEU][hapmap]
rs2116981	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2273564	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275508	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2281588	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2295594	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622319	0.86[CEU][hapmap]
rs3173443	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34131763	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34466819	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34716816	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35193936	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35227624	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35512245	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35576511	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36078605	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734573	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823180	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711164	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711165	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713135	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713137	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713142	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713143	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713144	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713145	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713146	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713148	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713150	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713151	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713152	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs536704	0.90[CEU][hapmap]
rs56310871	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364346	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61471148	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67162726	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67878650	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6901017	0.85[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6905522	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922063	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6931858	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932109	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6934769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941992	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739216	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7755442	0.95[CEU][hapmap];0.93[CHB][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868987	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9283884	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295758	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295759	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295760	0.89[CEU][hapmap]
rs9295761	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295762	0.90[CEU][hapmap];0.87[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9348789	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348793	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348794	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348796	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348797	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357060	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357061	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357062	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9357063	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357065	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357066	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366715	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368549	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368550	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368551	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368552	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368553	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368554	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368555	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368556	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368557	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368558	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368560	0.85[CEU][hapmap]
rs9380045	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380047	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380049	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380050	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380052	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380054	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380055	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380057	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380058	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380059	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380060	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380061	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380062	0.91[CEU][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380063	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380065	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380067	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393881	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393884	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393885	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393886	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393887	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393888	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393890	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393892	0.83[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393893	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393894	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393895	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393896	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393897	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393898	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393899	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393901	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9461433	0.95[CEU][hapmap];1.00[CHB][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461443	0.81[CEU][hapmap]
rs9468271	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468274	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468275	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9468277	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468278	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468286	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468290	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468292	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468295	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9468296	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468297	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468298	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs17711801	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs17711801	OR2B8P	cis	Thyroid	GTEx
rs17711801	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs17711801	RP1-265C24.5	cis	Esophagus Muscularis	GTEx
rs17711801	AL022393.7	cis	Nerve Tibial	GTEx
rs17711801	AL022393.7	cis	Muscle Skeletal	GTEx
rs17711801	OR2B7P	cis	Thyroid	GTEx
rs17711801	ZNF192P1	cis	Heart Left Ventricle	GTEx
rs17711801	RP1-265C24.5	cis	Muscle Skeletal	GTEx
rs17711801	ZNF165	cis	Nerve Tibial	GTEx
rs17711801	RP1-265C24.5	cis	Heart Left Ventricle	GTEx
rs17711801	ZNF192P1	cis	Thyroid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28077000-28092400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28082600-28096200	Strong transcription	Dnd41	blood
3	chr6:28091200-28096600	Strong transcription	K562	blood
4	chr6:28091600-28092400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:28091600-28092600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:28091600-28092600	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr6:28091600-28092600	Active TSS	Duodenum Mucosa	Duodenum
8	chr6:28091600-28092600	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr6:28091600-28093000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:28091600-28093200	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:28091600-28093200	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:28091600-28093200	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr6:28091600-28093600	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr6:28091800-28092400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:28091800-28092400	Active TSS	Colonic Mucosa	Colon
16	chr6:28091800-28092400	Active TSS	Fetal Brain Male	brain
17	chr6:28091800-28092400	Active TSS	Right Ventricle	heart
18	chr6:28091800-28092600	Active TSS	Primary monocytes fromperipheralblood	blood
19	chr6:28091800-28092600	Active TSS	Muscle Satellite Cultured Cells	--
20	chr6:28091800-28092600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:28091800-28092600	Active TSS	Colon Smooth Muscle	Colon
22	chr6:28091800-28092600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr6:28091800-28092600	Active TSS	Fetal Muscle Leg	muscle
24	chr6:28091800-28092600	Active TSS	Fetal Thymus	thymus
25	chr6:28091800-28092600	Active TSS	NH-A	brain
26	chr6:28091800-28092800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr6:28091800-28092800	Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr6:28091800-28092800	Active TSS	Fetal Stomach	stomach
29	chr6:28091800-28092800	Active TSS	Stomach Mucosa	stomach
30	chr6:28091800-28092800	Active TSS	HSMM	muscle
31	chr6:28091800-28092800	Active TSS	NHLF	lung
32	chr6:28091800-28093000	Active TSS	H9 Cell Line	embryonic stem cell
33	chr6:28091800-28093000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:28091800-28093000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:28091800-28093000	Active TSS	Psoas Muscle	Psoas
36	chr6:28091800-28093000	Active TSS	Right Atrium	heart
37	chr6:28091800-28093000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr6:28091800-28093000	Active TSS	Thymus	Thymus
39	chr6:28091800-28093000	Active TSS	GM12878-XiMat	blood
40	chr6:28091800-28093000	Active TSS	HSMMtube	muscle
41	chr6:28091800-28093200	Active TSS	H1 Cell Line	embryonic stem cell
42	chr6:28091800-28093200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:28091800-28093200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:28091800-28093200	Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr6:28091800-28093200	Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr6:28091800-28093200	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr6:28091800-28093200	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr6:28091800-28093200	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr6:28091800-28093200	Active TSS	Stomach Smooth Muscle	stomach
50	chr6:28091800-28093400	Active TSS	iPS-20b Cell Line	embryonic stem cell

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Variant report

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