Variant report

Variant	rs9393893
Chromosome Location	chr6:28109262-28109263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:174)
CpG islands
(count:61)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:174 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:28109227-28109996	HepG2	liver:	n/a	n/a
2	MAX	chr6:28109203-28109994	K562	blood:	n/a	n/a
3	TAF1	chr6:28109219-28109993	H1-neurons	neurons:	n/a	n/a
4	CREB1	chr6:28109130-28110116	HepG2	liver:	n/a	n/a
5	POLR2A	chr6:28109241-28110056	Hela-S3	cervix:	n/a	n/a
6	SP2	chr6:28109197-28110105	HepG2	liver:	n/a	n/a
7	POLR2A	chr6:28109223-28109997	GM18505	blood:	n/a	n/a
8	RFX5	chr6:28109252-28109920	GM12878	blood:	n/a	n/a
9	MTA3	chr6:28109079-28109899	GM12878	blood:	n/a	n/a
10	ZNF217	chr6:28109194-28109721	MCF-7	breast:	n/a	n/a
11	SP2	chr6:28109211-28110038	K562	blood:	n/a	n/a
12	POLR2A	chr6:28109061-28110164	PFSK-1	brain:	n/a	n/a
13	HEY1	chr6:28109220-28110034	K562	blood:	n/a	n/a
14	HDAC2	chr6:28109164-28110079	MCF-7	breast:	n/a	chr6:28109406-28109415
15	HDAC2	chr6:28109195-28110059	HepG2	liver:	n/a	chr6:28109406-28109415
16	FOXM1	chr6:28109168-28109956	GM12878	blood:	n/a	n/a
17	GABPA	chr6:28109012-28110358	MCF-7	breast:	n/a	chr6:28109409-28109418
18	MAX	chr6:28109133-28110143	HepG2	liver:	n/a	n/a
19	CTCF	chr6:28109260-28109410	AG10803	skin:	n/a	chr6:28109379-28109388
20	MBD4	chr6:28109097-28110126	HepG2	liver:	n/a	n/a
21	EBF1	chr6:28109142-28109740	GM12878	blood:	n/a	chr6:28109379-28109390 chr6:28109380-28109390 chr6:28109378-28109391 chr6:28109380-28109389
22	CBX3	chr6:28109158-28110043	K562	blood:	n/a	n/a
23	REST	chr6:28108894-28110340	H1-neurons	neurons:	n/a	chr6:28109479-28109492 chr6:28109466-28109474
24	MAX	chr6:28109227-28109936	NB4	blood:	n/a	n/a
25	POLR2A	chr6:28109238-28109943	A549	lung:	n/a	n/a
26	POLR2A	chr6:28109124-28110037	H1-neurons	neurons:	n/a	n/a
27	ZNF263	chr6:28109046-28109963	HEK293-T-REx	kidney:	n/a	n/a
28	POLR2A	chr6:28109215-28110058	GM12892	blood:	n/a	n/a
29	POLR2A	chr6:28109259-28109992	K562	blood:	n/a	n/a
30	BRCA1	chr6:28109254-28109952	HepG2	liver:	n/a	n/a
31	EBF1	chr6:28109199-28109736	GM12878	blood:	n/a	chr6:28109379-28109390 chr6:28109380-28109390 chr6:28109378-28109391 chr6:28109380-28109389
32	POLR2A	chr6:28109262-28110011	GM12878	blood:	n/a	n/a
33	MAZ	chr6:28109197-28110084	K562	blood:	n/a	n/a
34	HCFC1	chr6:28108846-28110617	Hela-S3	cervix:	n/a	n/a
35	SIN3AK20	chr6:28109172-28110193	HCT-116	colon:	n/a	n/a
36	SIN3AK20	chr6:28109238-28109850	HepG2	liver:	n/a	n/a
37	POLR2A	chr6:28109262-28109904	GM12878	blood:	n/a	n/a
38	RUNX3	chr6:28109216-28109984	GM12878	blood:	n/a	n/a
39	MAX	chr6:28109128-28110163	HepG2	liver:	n/a	n/a
40	TEAD4	chr6:28109067-28109853	HepG2	liver:	n/a	n/a
41	EBF1	chr6:28109182-28109737	GM12878	blood:	n/a	chr6:28109379-28109390 chr6:28109380-28109390 chr6:28109378-28109391 chr6:28109380-28109389
42	GABPA	chr6:28109256-28109955	K562	blood:	n/a	chr6:28109409-28109418
43	POLR2A	chr6:28109262-28110030	Hela-S3	cervix:	n/a	n/a
44	POLR2A	chr6:28109195-28110031	MCF10A-Er-Src	breast:	n/a	n/a
45	POLR2A	chr6:28109180-28110078	HepG2	liver:	n/a	n/a
46	SIN3AK20	chr6:28109211-28110016	K562	blood:	n/a	n/a
47	POLR2A	chr6:28109240-28110043	K562	blood:	n/a	n/a
48	MYBL2	chr6:28109167-28110209	HepG2	liver:	n/a	n/a
49	GABPA	chr6:28109152-28110169	A549	lung:	n/a	chr6:28109409-28109418
50	ELF1	chr6:28109243-28109984	GM12878	blood:	n/a	chr6:28109618-28109631

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:28109239-28109289	AoSMC	blood vessel:	n/a
2	chr6:28109239-28109289	NHDF-neo	bronchial:	n/a
3	chr6:28109239-28109289	HepG2	liver:	n/a
4	chr6:28109239-28109289	Hela-S3	cervix:	n/a
5	chr6:28109239-28109289	ProgFib	skin:	n/a
6	chr6:28109239-28109289	U87	brain:	n/a
7	chr6:28109239-28109289	HRE	kidney:	n/a
8	chr6:28109239-28109289	PANC-1	pancreas:	n/a
9	chr6:28109239-28109289	SKMC	muscle:	n/a
10	chr6:28109239-28109289	HCF	heart:	n/a
11	chr6:28109239-28109289	HL-60	blood:	n/a
12	chr6:28109239-28109289	BE2_C	brain:	n/a
13	chr6:28109239-28109289	NB4	blood:	n/a
14	chr6:28109239-28109289	SK-N-SH	brain:	n/a
15	chr6:28109239-28109289	LNCaP	prostate:	n/a
16	chr6:28109239-28109289	AG09309	skin:	n/a
17	chr6:28109239-28109289	ECC-1	luminal epithelium:	n/a
18	chr6:28109239-28109289	AG09319	gingival:	n/a
19	chr6:28109239-28109289	GM12891	blood:	n/a
20	chr6:28109239-28109289	PFSK-1	brain:	n/a
21	chr6:28109239-28109289	HEEpiC	esophagus:	n/a
22	chr6:28109239-28109289	A549	lung:	n/a
23	chr6:28109239-28109289	GM19239	blood:	n/a
24	chr6:28109239-28109289	HPAEpiC	pulmonary alveolar:	n/a
25	chr6:28109239-28109289	HEK293	kidney:	embryo
26	chr6:28109239-28109289	Hepatocyte	liver:	n/a
27	chr6:28109239-28109289	H1-hESC	embryonic stem cell:	embryo
28	chr6:28109239-28109289	AG04450	lung:	fetal
29	chr6:28109239-28109289	BJ	skin:	n/a
30	chr6:28109239-28109289	HCM	heart:	n/a
31	chr6:28109239-28109289	SK-N-SH_RA	brain:	n/a
32	chr6:28109239-28109289	HAEpiC	amniotic membrane:	n/a
33	chr6:28109239-28109289	HMEC	breast:	n/a
34	chr6:28109239-28109289	HRPEpiC	eye:	n/a
35	chr6:28109239-28109289	HIPEpiC	eye:	n/a
36	chr6:28109239-28109289	MCF10A-Er-Src	breast:	n/a
37	chr6:28109239-28109289	SAEC	small airway:	n/a
38	chr6:28109239-28109289	GM12892	blood:	n/a
39	chr6:28109239-28109289	GM12878	blood:	n/a
40	chr6:28109239-28109289	NH-A	brain:	n/a
41	chr6:28109239-28109289	ovcar-3	ovarian:	n/a
42	chr6:28109239-28109289	CMK	blood:	n/a
43	chr6:28109239-28109289	Caco-2	colon:	n/a
44	chr6:28109239-28109289	AG10803	skin:	n/a
45	chr6:28109239-28109289	GM06990	blood:	n/a
46	chr6:28109239-28109289	Jurkat	blood:	n/a
47	chr6:28109239-28109289	RPTEC	kidney:	n/a
48	chr6:28109239-28109289	MCF-7	breast:	n/a
49	chr6:28109239-28109289	SK-N-MC	brain:	n/a
50	chr6:28109239-28109289	HNPCEpiC	eye:	n/a

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28103775..28113920-chr6:28177995..28190115,32	K562	blood:
2	chr6:28103055..28111556-chr6:28296771..28308203,17	K562	blood:
3	chr6:28106928..28109553-chr6:28206567..28208256,2	MCF-7	breast:
4	chr6:27791730..27793405-chr6:28109237..28111401,3	K562	blood:
5	chr6:28108436..28110620-chr6:28192837..28194996,3	MCF-7	breast:
6	chr6:28091137..28098786-chr6:28103559..28111884,14	MCF-7	breast:
7	chr6:28044713..28049958-chr6:28107484..28111355,5	K562	blood:
8	chr6:28107051..28109569-chr6:28248173..28249802,3	K562	blood:
9	chr6:28108043..28113786-chr6:28190485..28194607,10	K562	blood:
10	chr6:28108695..28111169-chr6:28321228..28323056,2	K562	blood:
11	chr6:28108272..28111912-chr6:28184259..28187979,3	MCF-7	breast:
12	chr6:28092149..28093653-chr6:28108097..28109825,2	MCF-7	breast:
13	chr6:28109157..28111504-chr6:28323298..28325916,3	K562	blood:
14	chr6:28099723..28110178-chr6:28301599..28306918,14	K562	blood:
15	chr6:28102723..28113786-chr6:28183725..28194756,41	K562	blood:

No data

Variant related genes	Relation type
ZSCAN16-AS1	TF binding region
ZKSCAN8	TF binding region
ZSCAN16-AS1	CpG island
ZKSCAN8	CpG island
ENSG00000272009	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000196812	Chromatin interaction
ENSG00000137338	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000176933	Chromatin interaction
ENSG00000197238	Chromatin interaction

Extended variants
information (count: 166 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:166)

rs_ID	r²[population]
rs1150689	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1150692	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1150693	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1150696	0.86[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11552219	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12174753	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225598	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1225599	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12332979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1233697	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233699	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233701	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233704	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233705	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233707	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1237875	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1340004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs149897	0.81[CHB][hapmap]
rs149899	0.83[ASN][1000 genomes]
rs149900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs149942	0.81[CHB][hapmap]
rs149944	0.83[CHB][hapmap]
rs149945	0.83[CHB][hapmap]
rs149955	0.83[CHB][hapmap]
rs149959	0.83[CHB][hapmap]
rs149961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs149964	0.80[ASN][1000 genomes]
rs149969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs149970	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap]
rs149972	0.83[CHB][hapmap]
rs149989	0.83[CHB][hapmap]
rs156739	0.83[CHB][hapmap]
rs16893666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs172166	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs17711344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17711801	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17774663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs183244	0.82[CHB][hapmap]
rs1853097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904841	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1947862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947863	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203890	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs2116981	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2273564	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2281588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2295594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3173443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34131763	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34466819	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34716816	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35193936	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35227624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35512245	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35576511	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36078605	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757187	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713141	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713146	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs536704	0.81[CEU][hapmap]
rs56310871	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56364346	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61471148	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67162726	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67878650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6901017	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6905522	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6931858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6934769	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739216	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7755442	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9283884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295759	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295760	0.84[CEU][hapmap]
rs9295761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295762	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9348789	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9348793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357060	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357061	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357062	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9357063	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366715	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368549	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368550	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368551	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368552	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368553	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368556	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368557	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368560	0.90[CEU][hapmap]
rs9380045	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380049	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380050	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380054	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380056	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380058	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380062	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380067	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9393884	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393885	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393886	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393887	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393888	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393891	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393892	0.83[CHB][hapmap];0.88[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393896	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9461433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468271	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468275	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9468277	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468278	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468290	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468292	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468295	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9468296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468298	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs9393893	ZNF165	cis	Nerve Tibial	GTEx
rs9393893	LOC222701	cis	multi-tissue	Pritchard
rs9393893	ZNF192P1	cis	Heart Left Ventricle	GTEx
rs9393893	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs9393893	RP1-265C24.5	cis	Muscle Skeletal	GTEx
rs9393893	RP1-265C24.5	cis	Heart Left Ventricle	GTEx
rs9393893	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs9393893	OR2B7P	cis	Thyroid	GTEx
rs9393893	RP1-265C24.5	cis	Esophagus Muscularis	GTEx
rs9393893	OR2B8P	cis	Skin Sun Exposed Lower leg	GTEx
rs9393893		cis	Lymphoblastoid	GTEx
rs9393893	AL022393.7	cis	Muscle Skeletal	GTEx
rs9393893	OR2B8P	cis	Thyroid	GTEx
rs9393893	ZNF192P1	cis	Thyroid	GTEx
rs9393893	AL022393.7	cis	Nerve Tibial	GTEx
rs9393893	AL022393.7	cis	Heart Left Ventricle	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28107800-28109600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr6:28107800-28110800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:28108000-28110600	Active TSS	Brain Anterior Caudate	brain
4	chr6:28108000-28111000	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr6:28108200-28109600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:28108400-28110800	Active TSS	NHDF-Ad	bronchial
7	chr6:28108600-28109400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:28108800-28109400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:28109000-28109400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:28109000-28109400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr6:28109000-28109400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
12	chr6:28109000-28109400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr6:28109000-28109400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:28109000-28109400	Active TSS	Placenta	Placenta
15	chr6:28109000-28109400	Flanking Active TSS	GM12878-XiMat	blood
16	chr6:28109000-28109600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:28109000-28109600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr6:28109000-28109600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:28109000-28110000	Bivalent/Poised TSS	Fetal Stomach	stomach
20	chr6:28109000-28110200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
21	chr6:28109000-28110200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
22	chr6:28109000-28110400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:28109000-28110400	Active TSS	Brain Substantia Nigra	brain
24	chr6:28109000-28110400	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:28109000-28110400	Active TSS	Fetal Lung	lung
26	chr6:28109000-28110400	Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr6:28109000-28110400	Active TSS	HUVEC	blood vessel
28	chr6:28109000-28110600	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr6:28109000-28110600	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr6:28109000-28110600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
31	chr6:28109000-28110600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:28109000-28110600	Active TSS	Brain Cingulate Gyrus	brain
33	chr6:28109000-28110600	Active TSS	A549	lung
34	chr6:28109000-28110600	Active TSS	NH-A	brain
35	chr6:28109000-28110800	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr6:28109000-28110800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:28109000-28110800	Active TSS	Muscle Satellite Cultured Cells	--
38	chr6:28109000-28110800	Active TSS	Fetal Muscle Leg	muscle
39	chr6:28109000-28111000	Active TSS	H1 Cell Line	embryonic stem cell
40	chr6:28109000-28111000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:28109000-28111000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:28109000-28111000	Active TSS	Fetal Brain Female	brain
43	chr6:28109000-28111000	Active TSS	HSMMtube	muscle
44	chr6:28109000-28111000	Active TSS	NHLF	lung
45	chr6:28109000-28111400	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr6:28109200-28109400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:28109200-28109400	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:28109200-28109400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:28109200-28109400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:28109200-28109400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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