Variant report

Variant	rs9357066
Chromosome Location	chr6:28129831-28129832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:82)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:82 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF7	chr6:28129272-28129871	H1-hESC	embryonic stem cell:	n/a	n/a
2	MTA3	chr6:28129150-28129862	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:28129207-28130008	GM19099	blood:	n/a	n/a
4	GABPA	chr6:28129081-28130063	HL-60	blood:	n/a	n/a
5	POLR2A	chr6:28129328-28129835	GM12892	blood:	n/a	n/a
6	POLR2A	chr6:28129155-28129842	HepG2	liver:	n/a	n/a
7	POLR2A	chr6:28129068-28130016	HL-60	blood:	n/a	n/a
8	POLR2A	chr6:28129160-28129900	PFSK-1	brain:	n/a	n/a
9	POLR2A	chr6:28129112-28129876	GM12892	blood:	n/a	n/a
10	POLR2A	chr6:28129177-28129995	H1-hESC	embryonic stem cell:	n/a	n/a
11	USF2	chr6:28129286-28130066	H1-hESC	embryonic stem cell:	n/a	n/a
12	GABPA	chr6:28129302-28129862	MCF-7	breast:	n/a	n/a
13	POU2F2	chr6:28129352-28129845	GM12891	blood:	n/a	n/a
14	POLR2A	chr6:28129175-28129881	SK-N-SH	brain:	n/a	n/a
15	HEY1	chr6:28129221-28129839	K562	blood:	n/a	n/a
16	HEY1	chr6:28129184-28129848	HepG2	liver:	n/a	n/a
17	POLR2A	chr6:28128691-28129840	MCF10A-Er-Src	breast:	n/a	n/a
18	POLR2A	chr6:28129206-28129837	GM12878	blood:	n/a	n/a
19	POLR2A	chr6:28129342-28129833	Gliobla	brain:	n/a	n/a
20	PML	chr6:28129291-28129866	K562	blood:	n/a	n/a
21	ELK4	chr6:28129243-28129859	HEK293	kidney:	n/a	chr6:28129504-28129515 chr6:28129521-28129532 chr6:28129538-28129549
22	MAX	chr6:28129210-28129831	NB4	blood:	n/a	n/a
23	RAD21	chr6:28129220-28129862	H1-hESC	embryonic stem cell:	n/a	chr6:28129694-28129706
24	POLR2A	chr6:28129120-28129945	GM12878	blood:	n/a	n/a
25	POLR2A	chr6:28129239-28129833	U87	brain:	n/a	n/a
26	POLR2A	chr6:28129215-28129837	GM19193	blood:	n/a	n/a
27	TEAD4	chr6:28129394-28130143	HepG2	liver:	n/a	chr6:28129677-28129686
28	POLR2A	chr6:28129240-28129883	NB4	blood:	n/a	n/a
29	POLR2A	chr6:28129151-28129846	K562	blood:	n/a	n/a
30	PML	chr6:28129116-28129931	GM12878	blood:	n/a	n/a
31	POLR2A	chr6:28128832-28129989	PFSK-1	brain:	n/a	n/a
32	TAF1	chr6:28129355-28129841	K562	blood:	n/a	n/a
33	POLR2A	chr6:28129171-28129919	K562	blood:	n/a	n/a
34	MBD4	chr6:28129312-28129867	HepG2	liver:	n/a	n/a
35	GABPA	chr6:28129152-28129924	K562	blood:	n/a	n/a
36	POLR2A	chr6:28128580-28129922	A549	lung:	n/a	n/a
37	TAF1	chr6:28129285-28129853	HepG2	liver:	n/a	n/a
38	MAX	chr6:28129170-28129918	K562	blood:	n/a	n/a
39	POLR2A	chr6:28129194-28129893	GM12878	blood:	n/a	n/a
40	POLR2A	chr6:28129156-28129837	ECC-1	luminal epithelium:	n/a	n/a
41	POLR2A	chr6:28129219-28129888	GM18505	blood:	n/a	n/a
42	RELA	chr6:28129196-28129922	GM19099	blood:	n/a	n/a
43	TAF1	chr6:28129197-28129846	H1-hESC	embryonic stem cell:	n/a	n/a
44	REST	chr6:28129206-28129859	HL-60	blood:	n/a	chr6:28129438-28129451
45	POLR2A	chr6:28129277-28129942	ProgFib	skin:	n/a	n/a
46	CHD2	chr6:28129442-28129935	K562	blood:	n/a	n/a
47	MAX	chr6:28129233-28129834	SK-N-SH	brain:	n/a	n/a
48	POLR2A	chr6:28129182-28129882	GM12891	blood:	n/a	n/a
49	POLR2A	chr6:28129154-28129834	SK-N-MC	brain:	n/a	n/a
50	GABPA	chr6:28129232-28129972	SK-N-SH	brain:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28109577..28112061-chr6:28128257..28130394,3	MCF-7	breast:
2	chr17:73851685..73852659-chr6:28129475..28130353,2	Hela-S3	cervix:
3	chr6:28129539..28132293-chr6:28218155..28220468,2	K562	blood:
4	chr6:28126892..28131515-chr6:28301205..28304944,6	K562	blood:
5	chr6:27775710..27777880-chr6:28129434..28132036,2	K562	blood:
6	chr6:28127970..28130555-chr6:28316475..28318965,2	K562	blood:
7	chr6:28129397..28131360-chr6:28191862..28193480,2	K562	blood:
8	chr6:27857955..27860857-chr6:28129284..28131805,2	K562	blood:

No data

Variant related genes	Relation type
ZNF192P1	TF binding region
ENSG00000203813	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000132471	Chromatin interaction
ENSG00000189298	Chromatin interaction

Extended variants
information (count: 147 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs1150689	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1150692	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1150693	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1150696	0.82[ASN][1000 genomes]
rs11552219	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12174753	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1225598	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1225599	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12332979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233697	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1233699	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233701	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233704	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233705	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1233707	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1237875	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1340004	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs149899	0.82[ASN][1000 genomes]
rs16893666	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs172166	0.82[ASN][1000 genomes]
rs17711344	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17711801	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17774663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1853097	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1904841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1947862	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1947863	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2116981	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2273564	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275508	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2281588	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2295594	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3173443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34131763	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34466819	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34716816	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35193936	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35227624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35512245	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35576511	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36078605	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3734573	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3757187	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3823180	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713135	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713137	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713141	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713142	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713144	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713145	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713146	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713152	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56310871	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56364346	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61471148	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67162726	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67878650	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901017	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6905522	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922063	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6931858	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6932109	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6934769	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6941992	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739216	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7755442	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs868987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9283884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295761	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295762	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9348789	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9348793	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348796	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9348797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357060	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9357061	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357062	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9357063	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366715	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368549	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368550	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368551	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368552	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368553	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368554	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9368556	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368557	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380045	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380047	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380049	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380050	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380052	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380054	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380055	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380056	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380057	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9380058	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380067	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393881	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9393884	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393885	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393886	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393887	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393888	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393890	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393891	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393892	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9393895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9393896	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393897	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9393898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9393901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461433	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468271	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468274	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468275	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9468277	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468278	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9468286	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468290	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468292	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468295	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9468296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs9357066	AL022393.7	cis	Heart Left Ventricle	GTEx
rs9357066	RP1-265C24.5	cis	Esophagus Muscularis	GTEx
rs9357066	RP1-265C24.5	cis	Heart Left Ventricle	GTEx
rs9357066	OR2B7P	cis	Thyroid	GTEx
rs9357066	AL022393.7	cis	Muscle Skeletal	GTEx
rs9357066	ZNF192P1	cis	Thyroid	GTEx
rs9357066	AL022393.7	cis	Nerve Tibial	GTEx
rs9357066	ZNF165	cis	Nerve Tibial	GTEx
rs9357066	OR2B8P	cis	Skin Sun Exposed Lower leg	GTEx
rs9357066	ZNF192P1	cis	Heart Left Ventricle	GTEx
rs9357066	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs9357066	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs9357066	RP1-265C24.5	cis	Muscle Skeletal	GTEx
rs9357066	OR2B8P	cis	Thyroid	GTEx

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28127000-28134200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:28128800-28130000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:28129000-28130000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:28129000-28130000	Active TSS	H1 Cell Line	embryonic stem cell
5	chr6:28129000-28130000	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr6:28129000-28130000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chr6:28129000-28130000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr6:28129000-28130000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:28129000-28130000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:28129000-28130000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:28129000-28130000	Active TSS	Fetal Intestine Large	intestine
12	chr6:28129000-28130000	Flanking Active TSS	Fetal Muscle Leg	muscle
13	chr6:28129000-28130000	Active TSS	A549	lung
14	chr6:28129000-28130000	Active TSS	HepG2	liver
15	chr6:28129000-28130000	Active TSS	HMEC	breast
16	chr6:28129000-28130200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr6:28129000-28130200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:28129000-28130200	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr6:28129000-28130200	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr6:28129000-28130200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:28129000-28130200	Active TSS	Fetal Brain Female	brain
22	chr6:28129000-28130200	Active TSS	Fetal Kidney	kidney
23	chr6:28129000-28130200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr6:28129000-28130400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:28129000-28130400	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr6:28129000-28130400	Active TSS	Psoas Muscle	Psoas
27	chr6:28129000-28130400	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr6:28129000-28130600	Active TSS	GM12878-XiMat	blood
29	chr6:28129200-28130000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:28129200-28130000	Active TSS	H9 Cell Line	embryonic stem cell
31	chr6:28129200-28130000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:28129200-28130000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:28129200-28130000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:28129200-28130000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:28129200-28130000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr6:28129200-28130000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:28129200-28130000	Flanking Active TSS	Liver	Liver
38	chr6:28129200-28130000	Active TSS	Brain Cingulate Gyrus	brain
39	chr6:28129200-28130000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:28129200-28130000	Active TSS	Brain Substantia Nigra	brain
41	chr6:28129200-28130000	Active TSS	Fetal Intestine Small	intestine
42	chr6:28129200-28130000	Active TSS	Fetal Lung	lung
43	chr6:28129200-28130000	Active TSS	Fetal Stomach	stomach
44	chr6:28129200-28130000	Flanking Active TSS	Fetal Thymus	thymus
45	chr6:28129200-28130000	Active TSS	Placenta Amnion	Placenta Amnion
46	chr6:28129200-28130000	Active TSS	Right Ventricle	heart
47	chr6:28129200-28130000	Active TSS	Stomach Mucosa	stomach
48	chr6:28129200-28130000	Active TSS	Hela-S3	cervix
49	chr6:28129200-28130000	Active TSS	HSMM	muscle
50	chr6:28129200-28130000	Active TSS	K562	blood

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