The 2.0 version of rSNPBase

Variant report

Variant rs9380058
Chromosome Location chr6:28127444-28127445
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:28111400-28129200 Weak transcription Right Atrium heart
2 chr6:28121600-28129000 Weak transcription Fetal Intestine Small intestine
3 chr6:28121600-28129200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr6:28121800-28129200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr6:28122000-28129200 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr6:28122000-28129200 Weak transcription Stomach Mucosa stomach
7 chr6:28122200-28127600 Strong transcription Primary hematopoietic stem cells short term culture blood
8 chr6:28122200-28129000 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr6:28122200-28129000 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr6:28122200-28129200 Weak transcription Small Intestine intestine
11 chr6:28122600-28129000 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr6:28122600-28129200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr6:28122600-28129200 Weak transcription Esophagus oesophagus
14 chr6:28122600-28129200 Weak transcription Fetal Stomach stomach
15 chr6:28122800-28129200 Weak transcription Colonic Mucosa Colon
16 chr6:28122800-28129200 Weak transcription Gastric stomach
17 chr6:28122800-28129200 Weak transcription HSMMtube muscle
18 chr6:28122800-28129400 Weak transcription Spleen Spleen
19 chr6:28123000-28128000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr6:28123000-28129000 Weak transcription iPS-15b Cell Line embryonic stem cell
21 chr6:28123000-28129200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr6:28123000-28129200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr6:28123000-28129200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
24 chr6:28123000-28129200 Weak transcription Lung lung
25 chr6:28123000-28129200 Weak transcription Pancreas Pancrea
26 chr6:28123000-28129200 Weak transcription Rectal Smooth Muscle rectum
27 chr6:28123000-28129200 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr6:28123000-28129200 Weak transcription Hela-S3 cervix
29 chr6:28123200-28129200 Weak transcription H9 Cell Line embryonic stem cell
30 chr6:28123200-28129200 Weak transcription Brain Cingulate Gyrus brain
31 chr6:28123200-28129200 Weak transcription Fetal Thymus thymus
32 chr6:28123400-28129000 Weak transcription HMEC breast
33 chr6:28123400-28129200 Weak transcription Brain Angular Gyrus brain
34 chr6:28123400-28129200 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr6:28123600-28129000 Weak transcription ES-WA7 Cell Line embryonic stem cell
36 chr6:28123600-28129000 Weak transcription NHEK skin
37 chr6:28123600-28129200 Weak transcription Primary T regulatory cells fromperipheralblood blood
38 chr6:28123800-28129200 Weak transcription Primary neutrophils fromperipheralblood blood
39 chr6:28123800-28129600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr6:28124000-28129200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
41 chr6:28124200-28129000 Weak transcription Primary T helper naive cells fromperipheralblood blood
42 chr6:28124200-28129000 Weak transcription Fetal Kidney kidney
43 chr6:28124200-28129000 Weak transcription A549 lung
44 chr6:28124200-28129200 Weak transcription Right Ventricle heart
45 chr6:28124400-28128800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
46 chr6:28124400-28129000 Weak transcription H1 Cell Line embryonic stem cell
47 chr6:28124400-28129200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr6:28124400-28129200 Weak transcription Fetal Brain Male brain
49 chr6:28124600-28128800 Weak transcription Dnd41 blood
50 chr6:28124600-28129000 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015