Variant report

Variant	rs156744
Chromosome Location	chr6:27967274-27967275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27960700..27962517-chr6:27966241..27968012,2	K562	blood:
2	chr6:27965316..27968016-chr6:27970592..27972506,2	K562	blood:
3	chr6:27960700..27963468-chr6:27966241..27968640,2	K562	blood:

Extended variants
information (count: 121 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1150666	0.82[YRI][hapmap]
rs1150689	0.95[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12174753	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1225598	0.95[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs1225599	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs1233704	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs1233705	0.95[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs1340004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs149897	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs149899	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs149900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs149942	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs149944	1.00[YRI][hapmap]
rs149945	1.00[YRI][hapmap]
rs149946	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs149947	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs149948	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs149955	0.97[YRI][hapmap]
rs149959	0.97[YRI][hapmap]
rs149961	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs149964	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs149968	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs149969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs149970	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs149972	1.00[YRI][hapmap]
rs149989	1.00[YRI][hapmap]
rs156736	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs156739	0.97[YRI][hapmap]
rs1631552	0.90[YRI][hapmap]
rs16893666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs172166	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs175954	0.85[EUR][1000 genomes]
rs1770131	0.90[YRI][hapmap]
rs17711344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17711801	0.95[CEU][hapmap];0.93[CHB][hapmap]
rs17774663	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs183244	0.96[YRI][hapmap]
rs1853097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs188105	0.90[YRI][hapmap]
rs1904840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1904841	0.81[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs1947862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1947863	0.82[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap]
rs200969	0.95[CEU][hapmap]
rs200994	0.90[CEU][hapmap]
rs203876	0.90[YRI][hapmap]
rs203877	0.90[YRI][hapmap]
rs203882	0.90[YRI][hapmap]
rs203884	0.90[YRI][hapmap]
rs203890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs203893	0.90[YRI][hapmap]
rs2116984	0.80[YRI][hapmap]
rs2275508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2281588	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs2295594	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs2622319	0.84[YRI][hapmap]
rs3173443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs34171748	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3734573	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs3823180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs464312	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs469227	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4711165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4713135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4713137	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs4713142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4713143	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap]
rs4713144	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs4713145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4713148	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs4713152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs536704	0.81[CEU][hapmap];0.87[YRI][hapmap]
rs573179	0.95[CEU][hapmap]
rs66529373	0.81[EUR][1000 genomes]
rs6901017	0.82[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs6922063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6931858	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6932109	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6941992	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7755442	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs868987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9283884	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9295758	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs9295759	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs9295760	0.84[CEU][hapmap]
rs9295761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9295762	0.95[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap]
rs9348789	0.82[EUR][1000 genomes]
rs9348793	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9348794	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs9348796	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9357060	0.82[EUR][1000 genomes]
rs9368553	0.94[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap]
rs9368554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9368555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9368560	0.90[CEU][hapmap]
rs9380045	0.82[EUR][1000 genomes]
rs9380047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9380052	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9380055	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs9380057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9380059	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9380062	1.00[CEU][hapmap]
rs9393881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs9393890	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs9393893	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap]
rs9393897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9393901	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap]
rs9461433	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs9468271	0.82[EUR][1000 genomes]
rs9468274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs9468275	0.82[EUR][1000 genomes]
rs9468277	0.82[EUR][1000 genomes]
rs9468278	0.82[EUR][1000 genomes]
rs9468286	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs9468298	0.90[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
3	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases
4	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs156744	AL022393.7	cis	Muscle Skeletal	GTEx
rs156744		cis	Lymphoblastoid	GTEx
rs156744	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs156744	OR2B8P	cis	Thyroid	GTEx
rs156744	OR2B7P	cis	Thyroid	GTEx
rs156744	AL022393.7	cis	Nerve Tibial	GTEx
rs156744	RP1-265C24.5	cis	Heart Left Ventricle	GTEx
rs156744	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs156744	AL022393.7	cis	Artery Aorta	GTEx
rs156744	ZNF323	cis	Brain Pons	GTEx
rs156744	RP1-265C24.5	cis	Muscle Skeletal	GTEx
rs156744	ZNF323	cis	Temporal Cortex	GTEx
rs156744	ZNF323	cis	Frontal Cortex	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27966600-27970600	Weak transcription	Right Atrium	heart

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