Variant report

Variant	rs1150679
Chromosome Location	chr6:28151056-28151057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28128462..28132189-chr6:28149353..28151686,3	K562	blood:
2	chr6:28144649..28146793-chr6:28148487..28151313,2	K562	blood:
3	chr6:28145293..28147306-chr6:28149320..28151313,2	K562	blood:
4	chr6:28146868..28149346-chr6:28150403..28152659,2	K562	blood:

Variant related genes	Relation type
ENSG00000226314	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1150668	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1150670	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1150686	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1150690	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1150694	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1150705	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1150707	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1150709	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1150716	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1225618	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1225710	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1225715	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1233713	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs149956	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs149963	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1654774	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1736891	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1997660	0.83[AMR][1000 genomes]
rs2021826	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs203869	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs203878	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs213240	0.81[AMR][1000 genomes]
rs2142730	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2622322	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2791333	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34024998	0.81[EUR][1000 genomes]
rs4713158	0.83[AMR][1000 genomes]
rs707907	0.80[AMR][1000 genomes]
rs7206	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs853683	0.81[AMR][1000 genomes]
rs853684	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs853690	0.81[AMR][1000 genomes]
rs853693	0.83[AMR][1000 genomes]
rs9301	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9468333	0.83[AMR][1000 genomes]

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs1150679	AL022393.7	cis	lung	GTEx
rs1150679	AL022393.7	cis	Heart Left Ventricle	GTEx
rs1150679	ZSCAN31	cis	Esophagus Muscularis	GTEx
rs1150679	RP5-874C20.3	cis	Nerve Tibial	GTEx
rs1150679	ZSCAN12	Cis_1M	lymphoblastoid	RTeQTL
rs1150679	AL022393.7	cis	Esophagus Muscularis	GTEx
rs1150679	ZSCAN23	cis	Artery Tibial	GTEx
rs1150679	RP5-874C20.3	cis	Thyroid	GTEx
rs1150679	AL022393.7	cis	Muscle Skeletal	GTEx
rs1150679	ZSCAN31	cis	Muscle Skeletal	GTEx
rs1150679	AL022393.7	cis	Nerve Tibial	GTEx
rs1150679	ZSCAN23	cis	lung	GTEx
rs1150679	ZSCAN23	cis	Muscle Skeletal	GTEx
rs1150679	ZSCAN31	cis	Thyroid	GTEx
rs1150679	AL022393.7	cis	Artery Aorta	GTEx
rs1150679	ZSCAN31	cis	lung	GTEx
rs1150679	AL022393.7	cis	Artery Tibial	GTEx
rs1150679	RP5-874C20.3	cis	Esophagus Muscularis	GTEx

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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