Variant report
| Variant | rs1150691 |
|---|---|
| Chromosome Location | chr6:28168033-28168034 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28109697..28111469-chr6:28165643..28168631,4 | K562 | blood: | |
| 2 | chr6:28166864..28169407-chr6:28186000..28188266,2 | K562 | blood: | |
| 3 | chr6:28166299..28169743-chr6:28173090..28175496,4 | K562 | blood: | |
| 4 | chr6:28167517..28171168-chr6:28177888..28180588,3 | K562 | blood: | |
| 5 | chr6:28166974..28169940-chr6:28315541..28317306,2 | K562 | blood: | |
| 6 | chr6:28129355..28131496-chr6:28165330..28168244,2 | K562 | blood: | |
| 7 | chr6:28109697..28111824-chr6:28165805..28168424,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198315 | Chromatin interaction |
| ENSG00000226314 | Chromatin interaction |
| ENSG00000176933 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1150668 | 0.83[CHB][hapmap] |
| rs1150707 | 0.83[CHB][hapmap] |
| rs1150711 | 0.83[CHB][hapmap] |
| rs12214383 | 0.82[CHB][hapmap] |
| rs1225618 | 0.83[CEU][hapmap];0.83[CHB][hapmap] |
| rs1225710 | 0.83[CEU][hapmap] |
| rs1225715 | 0.82[CEU][hapmap];0.83[CHB][hapmap] |
| rs13408 | 0.83[CHB][hapmap] |
| rs1531681 | 0.83[CHB][hapmap] |
| rs1736891 | 0.83[CHB][hapmap] |
| rs1736895 | 0.83[CHB][hapmap] |
| rs1736904 | 0.83[JPT][hapmap] |
| rs203869 | 0.80[CEU][hapmap] |
| rs203878 | 0.83[CEU][hapmap] |
| rs213240 | 0.81[CEU][hapmap] |
| rs2622320 | 0.80[CEU][hapmap];0.83[CHB][hapmap] |
| rs2791333 | 0.80[CEU][hapmap] |
| rs9301 | 0.81[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883514 | chr6:28155418-28185726 | Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv883515 | chr6:28156476-28181675 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv883516 | chr6:28156476-28185726 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:14)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1150691 | AL022393.7 | cis | Nerve Tibial | GTEx |
| rs1150691 | ZSCAN31 | cis | Thyroid | GTEx |
| rs1150691 | BTN3A2 | Cis_chr | lymphoblastoid | RTeQTL |
| rs1150691 | RP5-874C20.3 | cis | Thyroid | GTEx |
| rs1150691 | ZSCAN12 | Cis_1M | lymphoblastoid | RTeQTL |
| rs1150691 | BTN3A2///BTN3A3 | Cis_chr | lymphoblastoid | RTeQTL |
| rs1150691 | RP5-874C20.3 | cis | Esophagus Muscularis | GTEx |
| rs1150691 | ZNF165 | cis | Nerve Tibial | GTEx |
| rs1150691 | AL022393.7 | cis | Artery Aorta | GTEx |
| rs1150691 | AL022393.7 | cis | Heart Left Ventricle | GTEx |
| rs1150691 | AL022393.7 | cis | Muscle Skeletal | GTEx |
| rs1150691 | AL022393.7 | cis | Artery Tibial | GTEx |
| rs1150691 | ZSCAN23 | cis | Muscle Skeletal | GTEx |
| rs1150691 | AL022393.7 | cis | Esophagus Muscularis | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
