Variant report

Variant	rs115126560
Chromosome Location	chr6:25084850-25084851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM65B-3	chr6:25084708-25085013	NONHSAT108136

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv830611	chr6:25039374-25199112	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv470806	chr6:25082262-25156197	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv462662	chr6:25084718-25165486	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv601166	chr6:25084718-25165486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25071200-25085200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:25071200-25085400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:25071400-25085600	Weak transcription	Primary B cells from cord blood	blood
4	chr6:25077000-25086600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:25079400-25085200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:25079400-25093000	Weak transcription	Ovary	ovary
7	chr6:25079600-25086800	Weak transcription	Aorta	Aorta
8	chr6:25079800-25086800	Weak transcription	Spleen	Spleen
9	chr6:25080200-25085800	Strong transcription	Dnd41	blood
10	chr6:25080400-25085200	Strong transcription	Thymus	Thymus
11	chr6:25080400-25085400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:25080400-25098000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:25080800-25085000	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:25080800-25085400	Strong transcription	Fetal Thymus	thymus
15	chr6:25081000-25086600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:25081200-25092000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:25081600-25088800	Weak transcription	Osteobl	bone
18	chr6:25082000-25085000	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr6:25082200-25094800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:25082400-25085200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:25082400-25085600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:25082600-25085200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:25082600-25105200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:25082800-25086000	Weak transcription	GM12878-XiMat	blood
25	chr6:25083000-25086000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr6:25083000-25086800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:25083200-25085800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:25083800-25085000	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr6:25083800-25085000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:25083800-25089800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:25083800-25093200	Weak transcription	Colonic Mucosa	Colon
32	chr6:25084000-25085400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr6:25084000-25085600	Strong transcription	Placenta	Placenta
34	chr6:25084000-25087600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:25084200-25087000	Enhancers	Liver	Liver
36	chr6:25084200-25089800	Weak transcription	Hela-S3	cervix
37	chr6:25084400-25085000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:25084400-25085000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:25084400-25085000	Enhancers	Fetal Intestine Small	intestine
40	chr6:25084400-25085000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
41	chr6:25084400-25085400	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr6:25084600-25085000	Genic enhancers	Primary B cells from peripheral blood	blood
43	chr6:25084600-25085000	Enhancers	Fetal Heart	heart
44	chr6:25084600-25085000	Enhancers	Fetal Kidney	kidney
45	chr6:25084600-25085000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr6:25084600-25085000	Strong transcription	HSMMtube	muscle
47	chr6:25084600-25085200	Strong transcription	Adipose Nuclei	Adipose
48	chr6:25084600-25085400	Genic enhancers	Primary hematopoietic stem cells	blood
49	chr6:25084800-25085000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:25084800-25085000	Strong transcription	Lung	lung

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