Variant report

Variant	rs11515534
Chromosome Location	chr9:101770974-101770975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101768904..101771612-chr9:101836295..101838610,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10988521	0.80[ASN][1000 genomes]
rs10988530	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11515536	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12377855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12378396	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12379014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12380469	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3739799	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61462449	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7022881	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032060	0.97[ASN][1000 genomes]
rs7034847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73503730	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7848837	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7851787	0.98[EUR][1000 genomes]
rs7861925	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101760200-101772800	Weak transcription	Aorta	Aorta
2	chr9:101761600-101814400	Weak transcription	Gastric	stomach
3	chr9:101761800-101777800	Weak transcription	Pancreas	Pancrea
4	chr9:101761800-101785200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:101763600-101778000	Weak transcription	HSMMtube	muscle
6	chr9:101764200-101772600	Strong transcription	Adipose Nuclei	Adipose
7	chr9:101764200-101775400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr9:101767600-101772600	Weak transcription	Ovary	ovary
9	chr9:101767600-101782000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:101768200-101771400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr9:101768200-101777200	Enhancers	Hela-S3	cervix
12	chr9:101768800-101778000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:101768800-101787200	Weak transcription	Right Atrium	heart
14	chr9:101769000-101771400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:101769000-101772400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr9:101769000-101772400	Weak transcription	Left Ventricle	heart
17	chr9:101769000-101790400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:101769200-101772400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:101769200-101777600	Weak transcription	Right Ventricle	heart
20	chr9:101769400-101771400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:101769400-101772600	Weak transcription	Fetal Stomach	stomach
22	chr9:101769400-101777800	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:101769400-101777800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:101769600-101772200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:101770000-101772600	Weak transcription	K562	blood
26	chr9:101770400-101771000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr9:101770800-101772200	Weak transcription	Fetal Muscle Leg	muscle
28	chr9:101770800-101772200	Weak transcription	Placenta	Placenta
29	chr9:101770800-101775200	Weak transcription	Primary T cells fromperipheralblood	blood

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