Variant report

Variant	rs12380469
Chromosome Location	chr9:101767984-101767985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101767464..101769714-chr9:101783800..101785964,2	MCF-7	breast:
2	chr9:101766336..101770748-chr9:101884242..101889062,4	K562	blood:
3	chr9:101767800..101770324-chr9:101773992..101776842,2	K562	blood:
4	chr9:101737367..101739848-chr9:101767863..101770116,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10988521	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs10988530	0.93[CEU][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11515534	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11515536	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12377855	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12378396	0.87[CEU][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12379014	0.93[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3739799	0.93[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61462449	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7022881	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7028686	0.86[CEU][hapmap]
rs7032060	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs7034847	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73503730	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7848837	0.93[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7851787	0.93[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes]
rs7861925	0.93[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101760200-101772800	Weak transcription	Aorta	Aorta
2	chr9:101761600-101768400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:101761600-101770400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:101761600-101814400	Weak transcription	Gastric	stomach
5	chr9:101761800-101768200	Weak transcription	Spleen	Spleen
6	chr9:101761800-101777800	Weak transcription	Pancreas	Pancrea
7	chr9:101761800-101785200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr9:101762600-101769400	Strong transcription	Fetal Muscle Trunk	muscle
9	chr9:101762800-101769000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:101762800-101769600	Strong transcription	Stomach Smooth Muscle	stomach
11	chr9:101763600-101778000	Weak transcription	HSMMtube	muscle
12	chr9:101764000-101768200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:101764000-101770800	Strong transcription	Fetal Muscle Leg	muscle
14	chr9:101764200-101769400	Strong transcription	Colon Smooth Muscle	Colon
15	chr9:101764200-101772600	Strong transcription	Adipose Nuclei	Adipose
16	chr9:101764200-101775400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr9:101764400-101768200	Weak transcription	Hela-S3	cervix
18	chr9:101764600-101768200	Weak transcription	K562	blood
19	chr9:101764800-101768600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:101765400-101769200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:101765600-101769400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:101765800-101768800	Strong transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:101766800-101768800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:101767200-101768000	Strong transcription	Right Ventricle	heart
25	chr9:101767200-101768600	Weak transcription	Left Ventricle	heart
26	chr9:101767400-101768200	ZNF genes & repeats	Fetal Stomach	stomach
27	chr9:101767400-101769000	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr9:101767600-101768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:101767600-101769000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:101767600-101769400	Genic enhancers	Placenta	Placenta
31	chr9:101767600-101772600	Weak transcription	Ovary	ovary
32	chr9:101767600-101782000	Weak transcription	Rectal Smooth Muscle	rectum

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