Variant report

Variant	rs7028686
Chromosome Location	chr9:101787017-101787018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101782595..101784230-chr9:101785784..101788203,2	MCF-7	breast:
2	chr9:101786238..101788647-chr9:101789289..101792240,2	K562	blood:
3	chr9:101780306..101785966-chr9:101786034..101790764,8	K562	blood:
4	chr9:101779716..101783952-chr9:101784927..101791325,8	K562	blood:
5	chr9:101786925..101789354-chr9:101811667..101813513,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12377855	0.86[CEU][hapmap]
rs12378396	0.86[CEU][hapmap]
rs12379014	0.93[CEU][hapmap]
rs12380469	0.86[CEU][hapmap]
rs3739799	0.93[CEU][hapmap]
rs7022881	0.93[CEU][hapmap]
rs7034847	0.93[CEU][hapmap]
rs73503730	0.84[EUR][1000 genomes]
rs7848837	0.93[CEU][hapmap]
rs7851787	0.93[CEU][hapmap]
rs7861925	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528933	chr9:101784777-101788522	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101768800-101787200	Weak transcription	Right Atrium	heart
3	chr9:101769000-101790400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:101773000-101793600	Weak transcription	Aorta	Aorta
5	chr9:101776600-101790200	Weak transcription	Fetal Intestine Small	intestine
6	chr9:101777000-101788000	Weak transcription	Esophagus	oesophagus
7	chr9:101779400-101788600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:101781200-101791800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:101782000-101788400	Weak transcription	K562	blood
10	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
11	chr9:101785000-101788000	Weak transcription	Pancreas	Pancrea
12	chr9:101785000-101788200	Weak transcription	Right Ventricle	heart
13	chr9:101785200-101788000	Weak transcription	Left Ventricle	heart
14	chr9:101785600-101787400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:101785600-101788000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:101785600-101789000	Weak transcription	Fetal Thymus	thymus
17	chr9:101786000-101788800	Weak transcription	Thymus	Thymus
18	chr9:101786400-101787200	Weak transcription	Placenta	Placenta
19	chr9:101786400-101787400	Weak transcription	HSMMtube	muscle
20	chr9:101786400-101787600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:101786400-101788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:101786400-101788600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr9:101786400-101788600	Weak transcription	Brain Anterior Caudate	brain
24	chr9:101786400-101788600	Weak transcription	NHDF-Ad	bronchial
25	chr9:101786400-101788800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr9:101786400-101788800	Strong transcription	Fetal Stomach	stomach
27	chr9:101786400-101789200	Strong transcription	Colon Smooth Muscle	Colon
28	chr9:101786400-101790600	Strong transcription	Stomach Smooth Muscle	stomach
29	chr9:101786400-101791200	Weak transcription	Osteobl	bone
30	chr9:101786400-101791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr9:101786400-101791400	Weak transcription	HSMM	muscle
32	chr9:101786400-101794200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:101786600-101787800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:101786600-101788200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:101786600-101791400	Weak transcription	NH-A	brain
36	chr9:101786600-101791600	Strong transcription	Adipose Nuclei	Adipose
37	chr9:101786600-101794000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr9:101786600-101794000	Strong transcription	Fetal Muscle Leg	muscle
39	chr9:101786800-101790600	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr9:101787000-101787200	Enhancers	Ovary	ovary
41	chr9:101787000-101787200	Enhancers	Placenta Amnion	Placenta Amnion
42	chr9:101787000-101787400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:101787000-101787400	Flanking Active TSS	Hela-S3	cervix
44	chr9:101787000-101787600	Enhancers	NHLF	lung
45	chr9:101787000-101788800	Weak transcription	Primary T cells from cord blood	blood

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