Variant report

Variant	rs11522284
Chromosome Location	chr9:140320172-140320173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr9:140320001-140320292	SK-N-SH_RA	brain:	n/a	n/a
2	TEAD4	chr9:140319997-140320332	K562	blood:	n/a	n/a
3	MAZ	chr9:140320061-140320343	K562	blood:	n/a	n/a
4	TEAD4	chr9:140319993-140320411	K562	blood:	n/a	n/a
5	MAFK	chr9:140320040-140320340	K562	blood:	n/a	n/a
6	RAD21	chr9:140320080-140320310	K562	blood:	n/a	n/a
7	TCF12	chr9:140319977-140320495	SK-N-SH	brain:	n/a	n/a
8	TBL1XR1	chr9:140320015-140320380	K562	blood:	n/a	n/a
9	BHLHE40	chr9:140320012-140320331	K562	blood:	n/a	n/a
10	TAL1	chr9:140320018-140320365	K562	blood:	n/a	n/a
11	UBTF	chr9:140320024-140320313	K562	blood:	n/a	n/a
12	CTCF	chr9:140320120-140320270	WERI-Rb-1	eye:	n/a	n/a
13	TBP	chr9:140319943-140320337	K562	blood:	n/a	n/a
14	FOS	chr9:140320021-140320223	MCF10A-Er-Src	breast:	n/a	n/a
15	RCOR1	chr9:140320039-140320401	K562	blood:	n/a	n/a
16	PBX3	chr9:140320056-140320293	SK-N-SH	brain:	n/a	n/a
17	ZNF384	chr9:140320070-140320528	K562	blood:	n/a	n/a
18	NR2F2	chr9:140319923-140320411	K562	blood:	n/a	n/a
19	STAT3	chr9:140320039-140320398	MCF10A-Er-Src	breast:	n/a	n/a
20	EP300	chr9:140320047-140320247	GM12878	blood:	n/a	n/a
21	MAX	chr9:140320029-140320282	K562	blood:	n/a	n/a
22	MYC	chr9:140320147-140320346	K562	blood:	n/a	n/a
23	CEBPB	chr9:140320172-140320449	K562	blood:	n/a	n/a
24	EP300	chr9:140320032-140320360	K562	blood:	n/a	n/a
25	FOS	chr9:140320001-140320352	MCF10A-Er-Src	breast:	n/a	n/a
26	RPC155	chr9:140319645-140320373	K562	blood:	n/a	n/a
27	ZMIZ1	chr9:140320056-140320318	K562	blood:	n/a	n/a
28	NR2F2	chr9:140320014-140320308	K562	blood:	n/a	n/a
29	STAT3	chr9:140319936-140320180	MCF10A-Er-Src	breast:	n/a	n/a
30	POLR2A	chr9:140320164-140320364	K562	blood:	n/a	n/a
31	UBTF	chr9:140319994-140320359	K562	blood:	n/a	n/a
32	STAT3	chr9:140319981-140320310	MCF10A-Er-Src	breast:	n/a	n/a
33	MAX	chr9:140320069-140320229	K562	blood:	n/a	n/a
34	STAT3	chr9:140319993-140320271	MCF10A-Er-Src	breast:	n/a	n/a
35	CBX3	chr9:140320047-140320333	K562	blood:	n/a	n/a
36	JUND	chr9:140319970-140320393	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:140191868..140203757-chr9:140310976..140322315,40	MCF-7	breast:
2	chr9:140192198..140198165-chr9:140316235..140327530,20	K562	blood:
3	chr9:140189132..140191580-chr9:140319161..140320665,2	K562	blood:
4	chr9:140319288..140321017-chr9:140351313..140353220,2	K562	blood:
5	chr9:140187746..140203383-chr9:140313735..140333462,78	MCF-7	breast:
6	chr9:140304116..140306479-chr9:140318996..140322047,3	K562	blood:

No data

Variant related genes	Relation type
EXD3	TF binding region
ENSG00000165802	Chromatin interaction
ENSG00000198435	Chromatin interaction
ENSG00000260996	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11507687	1.00[CHD][hapmap]
rs11541259	1.00[CHD][hapmap]
rs12156648	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs12236403	1.00[CHD][hapmap]
rs13284456	1.00[CHD][hapmap]
rs13293120	1.00[LWK][hapmap]
rs2298171	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs28371983	1.00[CHD][hapmap]
rs28527282	1.00[CHD][hapmap]
rs28563072	1.00[CHD][hapmap]
rs28657895	1.00[CHD][hapmap]
rs28859278	1.00[CHD][hapmap]
rs35563407	1.00[LWK][hapmap]
rs3750384	1.00[CHD][hapmap]
rs4076685	1.00[LWK][hapmap]
rs7029134	1.00[CHD][hapmap]
rs821314	1.00[CHD][hapmap]
rs872341	1.00[CHD][hapmap]
rs9776113	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:62 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
3	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
4	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
6	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
7	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
8	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
9	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
10	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
11	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
12	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
13	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
14	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
15	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
16	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
17	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
18	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
19	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
20	nsv894554	chr9:139879170-140339091	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
21	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
22	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
23	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
24	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
25	nsv894583	chr9:139950351-140382705	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
26	nsv894584	chr9:139950351-140400275	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	298 gene(s)	inside rSNPs	diseases
27	nsv894588	chr9:139963091-140372570	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	295 gene(s)	inside rSNPs	diseases
28	nsv894606	chr9:140018138-140368860	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
29	nsv894607	chr9:140018138-140382705	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
30	nsv894608	chr9:140018138-140392494	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
31	nsv894609	chr9:140018138-140400275	Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
32	nsv894610	chr9:140018138-140408904	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	277 gene(s)	inside rSNPs	diseases
33	nsv894625	chr9:140068342-140339091	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
34	nsv894626	chr9:140068342-140368860	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
35	nsv894627	chr9:140068342-140382705	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	268 gene(s)	inside rSNPs	diseases
36	nsv894628	chr9:140068342-140400275	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	269 gene(s)	inside rSNPs	diseases
37	nsv894638	chr9:140094605-140368860	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
38	nsv531664	chr9:140110329-140725056	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
39	nsv531654	chr9:140110329-141033187	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	281 gene(s)	inside rSNPs	diseases
40	esv1824250	chr9:140118448-140390615	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	230 gene(s)	inside rSNPs	diseases
41	nsv894645	chr9:140165584-140408904	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
42	esv1824017	chr9:140197784-140341751	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
43	esv2758205	chr9:140197784-140341751	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
44	esv2759721	chr9:140197784-140341751	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
45	nsv1047563	chr9:140219047-140560852	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
46	nsv540357	chr9:140219047-140560852	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
47	nsv894653	chr9:140228092-140343189	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
48	nsv531602	chr9:140240417-140535223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	diseases
49	nsv932633	chr9:140240417-141053535	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
50	nsv894654	chr9:140243547-140382705	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140318400-140320600	Enhancers	Fetal Muscle Trunk	muscle
2	chr9:140318400-140320800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:140318600-140320800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:140318600-140321000	Enhancers	HMEC	breast
5	chr9:140318600-140325000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:140318600-140335800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:140318800-140320200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:140318800-140320400	Weak transcription	Spleen	Spleen
9	chr9:140318800-140320600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:140318800-140320800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:140318800-140320800	Enhancers	Esophagus	oesophagus
12	chr9:140318800-140320800	Enhancers	Pancreas	Pancrea
13	chr9:140318800-140321000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr9:140318800-140322200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:140318800-140322600	Weak transcription	Primary B cells from cord blood	blood
16	chr9:140318800-140323400	Weak transcription	Stomach Mucosa	stomach
17	chr9:140318800-140324000	Weak transcription	Ovary	ovary
18	chr9:140318800-140324600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:140318800-140329200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr9:140318800-140329600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:140318800-140330800	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:140318800-140335600	Weak transcription	Right Atrium	heart
23	chr9:140319000-140320200	Genic enhancers	Fetal Intestine Small	intestine
24	chr9:140319000-140321800	Weak transcription	Fetal Stomach	stomach
25	chr9:140319000-140322800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr9:140319000-140323400	Weak transcription	Liver	Liver
27	chr9:140319000-140324400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr9:140319000-140327000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:140319200-140320400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:140319200-140320600	Enhancers	Fetal Heart	heart
31	chr9:140319200-140320600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr9:140319400-140329600	Weak transcription	Lung	lung
33	chr9:140319600-140320400	Weak transcription	Left Ventricle	heart
34	chr9:140319600-140320600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:140319600-140320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr9:140319600-140320600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:140319600-140320600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr9:140319600-140320800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr9:140319600-140320800	Enhancers	K562	blood
40	chr9:140319600-140323400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr9:140319600-140324000	Weak transcription	Fetal Muscle Leg	muscle
42	chr9:140319600-140324400	Weak transcription	Right Ventricle	heart
43	chr9:140319600-140324400	Weak transcription	HSMMtube	muscle
44	chr9:140319600-140324600	Weak transcription	Gastric	stomach
45	chr9:140319600-140330400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr9:140319800-140320400	Enhancers	NHEK	skin
47	chr9:140319800-140322200	Weak transcription	Colonic Mucosa	Colon
48	chr9:140319800-140322200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr9:140319800-140323600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr9:140319800-140324000	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links