Variant report

Variant	rs1152412
Chromosome Location	chr14:82864210-82864211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1152413	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1152414	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1152415	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1152416	0.91[AMR][1000 genomes]
rs1152417	0.83[AMR][1000 genomes]
rs1152418	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs799255	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs799257	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs799258	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs799259	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902123	chr14:82778603-82876504	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv1051581	chr14:82829319-83051904	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82855400-82864800	Weak transcription	Pancreas	Pancrea
2	chr14:82856200-82864600	Weak transcription	Aorta	Aorta
3	chr14:82862800-82865000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:82863200-82864400	Weak transcription	Brain Angular Gyrus	brain
5	chr14:82863400-82864600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:82863400-82864800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:82863600-82864400	Enhancers	Brain Substantia Nigra	brain
8	chr14:82864000-82864400	Enhancers	Brain Hippocampus Middle	brain
9	chr14:82864000-82865000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr14:82864200-82864400	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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