Variant report

Variant	rs1152417
Chromosome Location	chr14:82855236-82855237
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1152412	0.83[AMR][1000 genomes]
rs1152413	0.84[AMR][1000 genomes]
rs1152414	0.85[AMR][1000 genomes]
rs1152415	0.87[AMR][1000 genomes]
rs1152416	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1152418	0.87[AMR][1000 genomes]
rs1152419	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs799255	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs799256	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs799257	0.86[AMR][1000 genomes]
rs799258	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs799259	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902123	chr14:82778603-82876504	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv1051581	chr14:82829319-83051904	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82853600-82855400	Enhancers	Brain Anterior Caudate	brain
2	chr14:82854000-82855400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:82854200-82855400	Enhancers	Brain Cingulate Gyrus	brain
4	chr14:82854200-82856000	Enhancers	Brain Hippocampus Middle	brain
5	chr14:82854400-82855800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:82854400-82856200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr14:82854800-82855400	Enhancers	Aorta	Aorta
8	chr14:82855200-82855400	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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