Variant report

Variant	rs1152624
Chromosome Location	chr11:64420383-64420384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64072922..64075153-chr11:64420349..64423675,3	MCF-7	breast:
2	chr11:64257408..64258030-chr11:64420262..64420923,4	MCF-7	breast:
3	chr11:64216005..64216939-chr11:64420369..64421221,4	K562	blood:
4	chr11:64216032..64217725-chr11:64420241..64421734,10	MCF-7	breast:
5	chr11:64332913..64333460-chr11:64420253..64421187,2	MCF-7	breast:
6	chr11:64420274..64420985-chr11:64490663..64491460,2	K562	blood:
7	chr11:64123857..64124575-chr11:64420219..64421131,3	K562	blood:
8	chr11:64125161..64127762-chr11:64418891..64421292,2	MCF-7	breast:
9	chr11:64256978..64257884-chr11:64420241..64421230,8	MCF-7	breast:
10	chr11:64215881..64217157-chr11:64420235..64421201,5	MCF-7	breast:
11	chr11:64419216..64421047-chr11:64455439..64457519,3	MCF-7	breast:
12	chr11:64320674..64321889-chr11:64420287..64421217,10	MCF-7	breast:
13	chr11:64420269..64421221-chr11:64455783..64456511,2	MCF-7	breast:
14	chr11:64256558..64257516-chr11:64420267..64421240,6	K562	blood:
15	chr11:64320649..64323299-chr11:64420155..64421512,11	K562	blood:
16	chr11:64420054..64420784-chr11:64471497..64472317,2	MCF-7	breast:
17	chr11:64419510..64421158-chr11:64490606..64491570,7	MCF-7	breast:
18	chr11:64320623..64321636-chr11:64420262..64421075,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000181908	Chromatin interaction
ENSG00000110076	Chromatin interaction
ENSG00000162302	Chromatin interaction
ENSG00000173153	Chromatin interaction
ENSG00000168065	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1152625	0.90[AFR][1000 genomes]
rs1152626	1.00[AFR][1000 genomes]
rs1152630	0.93[AFR][1000 genomes]
rs1207212	0.93[AFR][1000 genomes]
rs1705361	0.90[AFR][1000 genomes]
rs2849041	0.96[AFR][1000 genomes]
rs2849042	0.90[AFR][1000 genomes]
rs2957561	1.00[AFR][1000 genomes]
rs948338	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897693	chr11:64305452-64440920	Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422214	chr11:64312491-64483418	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832188	chr11:64315368-64485209	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv468596	chr11:64334114-64527080	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv555195	chr11:64334114-64527080	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv897694	chr11:64334114-64584959	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
7	nsv818842	chr11:64345448-64546391	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
8	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
9	nsv555196	chr11:64357072-64559898	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
10	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
11	nsv1051350	chr11:64372906-64533632	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv555198	chr11:64373899-64573589	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
13	esv1804443	chr11:64386453-64534785	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64411600-64427800	Weak transcription	Aorta	Aorta
2	chr11:64411800-64420400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:64412400-64428200	Weak transcription	Right Atrium	heart
4	chr11:64412600-64425600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:64415000-64423600	Weak transcription	NHDF-Ad	bronchial
6	chr11:64415400-64423000	Weak transcription	Osteobl	bone
7	chr11:64415600-64420400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:64415600-64422400	Weak transcription	HSMM	muscle
9	chr11:64415600-64423000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:64415800-64430000	Weak transcription	Gastric	stomach
11	chr11:64417000-64420800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:64417000-64420800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:64417000-64422600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:64417000-64423400	Weak transcription	HSMMtube	muscle
15	chr11:64417200-64420400	Weak transcription	Ovary	ovary
16	chr11:64417200-64420400	Weak transcription	Spleen	Spleen
17	chr11:64417200-64421200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:64417400-64420400	Weak transcription	Fetal Thymus	thymus
19	chr11:64418400-64420400	Weak transcription	Pancreas	Pancrea
20	chr11:64418600-64421200	Enhancers	Fetal Intestine Small	intestine
21	chr11:64418800-64420400	Weak transcription	Fetal Brain Female	brain
22	chr11:64418800-64420600	Weak transcription	Right Ventricle	heart
23	chr11:64418800-64420800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:64419000-64420400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:64419600-64421000	Enhancers	Fetal Intestine Large	intestine
26	chr11:64419600-64421000	Enhancers	K562	blood
27	chr11:64419800-64420400	Weak transcription	Brain Germinal Matrix	brain
28	chr11:64419800-64421200	Enhancers	Brain Hippocampus Middle	brain
29	chr11:64420000-64420400	Enhancers	Colon Smooth Muscle	Colon
30	chr11:64420000-64420800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:64420000-64421000	Enhancers	Brain Anterior Caudate	brain
32	chr11:64420000-64421200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:64420000-64421600	Enhancers	Brain Substantia Nigra	brain
34	chr11:64420000-64422200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:64420000-64423000	Enhancers	Fetal Muscle Leg	muscle
36	chr11:64420200-64420600	Enhancers	Rectal Smooth Muscle	rectum
37	chr11:64420200-64420800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:64420200-64420800	Enhancers	Fetal Lung	lung
39	chr11:64420200-64420800	Enhancers	Stomach Smooth Muscle	stomach
40	chr11:64420200-64421000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:64420200-64421000	Enhancers	Brain Cingulate Gyrus	brain
42	chr11:64420200-64421000	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr11:64420200-64421200	Enhancers	Fetal Brain Male	brain
44	chr11:64420200-64421200	Bivalent Enhancer	Fetal Stomach	stomach
45	chr11:64420200-64421600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:64420200-64422400	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr11:64420200-64426200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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