Variant report

Variant	rs1207212
Chromosome Location	chr11:64460672-64460673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64456832..64458723-chr11:64460290..64461940,2	K562	blood:
2	11:64207610-64216678..11:64460470-64464888	K562	blood:
3	chr11:64459982..64462889-chr11:64467567..64471218,3	MCF-7	breast:
4	chr11:64442311..64444826-chr11:64460106..64462040,2	MCF-7	breast:
5	chr11:64454221..64456529-chr11:64460067..64463247,3	MCF-7	breast:
6	chr11:64452823..64454490-chr11:64458467..64461028,2	K562	blood:
7	chr11:64454763..64457132-chr11:64459116..64461496,2	K562	blood:

Variant related genes	Relation type
ENSG00000181908	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1152624	0.93[AFR][1000 genomes]
rs1152625	0.84[AFR][1000 genomes]
rs1152626	0.93[AFR][1000 genomes]
rs1152630	1.00[AFR][1000 genomes]
rs1705361	0.83[AFR][1000 genomes]
rs2849041	0.90[AFR][1000 genomes]
rs2849042	0.84[AFR][1000 genomes]
rs2957561	0.93[AFR][1000 genomes]
rs948338	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422214	chr11:64312491-64483418	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv832188	chr11:64315368-64485209	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv468596	chr11:64334114-64527080	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv555195	chr11:64334114-64527080	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv897694	chr11:64334114-64584959	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv818842	chr11:64345448-64546391	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
7	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
8	nsv555196	chr11:64357072-64559898	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
9	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
10	nsv1051350	chr11:64372906-64533632	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv555198	chr11:64373899-64573589	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
12	esv1804443	chr11:64386453-64534785	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv897697	chr11:64447420-64584959	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
14	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
15	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
16	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64456400-64462200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:64456800-64461800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:64457000-64460800	Weak transcription	Primary B cells from cord blood	blood
4	chr11:64457000-64461400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:64457200-64461400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:64457400-64461400	Weak transcription	Brain Substantia Nigra	brain
7	chr11:64457400-64461600	Weak transcription	Brain Angular Gyrus	brain
8	chr11:64457800-64461000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:64458200-64461200	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:64458600-64461000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:64459600-64460800	Weak transcription	Brain Germinal Matrix	brain
12	chr11:64459600-64461200	Enhancers	Primary T cells from cord blood	blood
13	chr11:64459600-64461600	Enhancers	Fetal Thymus	thymus
14	chr11:64460000-64463200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:64460000-64464200	Enhancers	Fetal Brain Male	brain
16	chr11:64460200-64461000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr11:64460200-64461000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
18	chr11:64460200-64461200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:64460200-64461200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr11:64460200-64461200	Enhancers	Primary hematopoietic stem cells	blood
21	chr11:64460200-64462000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
22	chr11:64460200-64462200	Enhancers	Fetal Brain Female	brain
23	chr11:64460200-64463000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:64460400-64460800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:64460400-64460800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:64460400-64460800	Active TSS	Thymus	Thymus
27	chr11:64460400-64461000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
28	chr11:64460400-64461000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:64460400-64461000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
30	chr11:64460400-64462800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:64460400-64463000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr11:64460400-64463200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:64460600-64460800	Bivalent/Poised TSS	Primary T helper cells fromperipheralblood	blood
34	chr11:64460600-64460800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
35	chr11:64460600-64460800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
36	chr11:64460600-64460800	Bivalent Enhancer	Fetal Stomach	stomach
37	chr11:64460600-64461000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood

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