Variant report

Variant	rs115283880
Chromosome Location	chr15:77362353-77362354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr15:77362078-77364243	IMR90	lung:	n/a	chr15:77363522-77363531 chr15:77362963-77362972
2	POLR2A	chr15:77361656-77363688	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr15:77361797-77363764	MCF10A-Er-Src	breast:	n/a	n/a
4	TCF12	chr15:77361704-77362420	A549	lung:	n/a	n/a
5	POLR2A	chr15:77362207-77362364	HUVEC	blood vessel:	n/a	n/a
6	ZNF263	chr15:77361810-77363810	HEK293-T-REx	kidney:	n/a	chr15:77362104-77362125 chr15:77362118-77362127 chr15:77362103-77362112 chr15:77362055-77362064
7	RCOR1	chr15:77362041-77362512	K562	blood:	n/a	n/a
8	GATA3	chr15:77362190-77362664	SH-SY5Y	brain:	n/a	chr15:77362457-77362467 chr15:77362454-77362466 chr15:77362457-77362464 chr15:77362455-77362465
9	NR3C1	chr15:77361928-77362440	A549	lung:	n/a	chr15:77362183-77362200 chr15:77362154-77362169
10	HCFC1	chr15:77362158-77364773	Hela-S3	cervix:	n/a	n/a
11	MAZ	chr15:77362242-77362491	K562	blood:	n/a	n/a
12	STAT3	chr15:77361943-77362407	MCF10A-Er-Src	breast:	n/a	n/a
13	GATA1	chr15:77362127-77363719	PBDE	blood:	n/a	chr15:77362457-77362467 chr15:77362454-77362466 chr15:77362457-77362464 chr15:77362455-77362465
14	MYC	chr15:77362317-77363767	K562	blood:	n/a	chr15:77363522-77363531 chr15:77362963-77362972
15	ZNF143	chr15:77362241-77362369	K562	blood:	n/a	n/a
16	STAT3	chr15:77361984-77362501	MCF10A-Er-Src	breast:	n/a	n/a
17	JUND	chr15:77362097-77363072	K562	blood:	n/a	chr15:77362215-77362224
18	TAL1	chr15:77362200-77363435	K562	blood:	n/a	n/a
19	MXI1	chr15:77361714-77364220	SK-N-SH	brain:	n/a	n/a
20	TBL1XR1	chr15:77362326-77362989	K562	blood:	n/a	n/a
21	POLR2A	chr15:77361739-77363695	HepG2	liver:	n/a	n/a
22	STAT3	chr15:77362041-77362359	MCF10A-Er-Src	breast:	n/a	n/a
23	MYC	chr15:77362300-77363749	K562	blood:	n/a	chr15:77363522-77363531 chr15:77362963-77362972
24	RCOR1	chr15:77362254-77362766	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:77195708..77198409-chr15:77360659..77363583,2	K562	blood:
2	chr15:77334559..77338244-chr15:77361377..77364599,4	K562	blood:
3	chr15:77362106..77364633-chr15:77375983..77377903,3	MCF-7	breast:
4	chr15:76602919..76604847-chr15:77361875..77364736,2	K562	blood:
5	chr15:77196909..77199186-chr15:77360659..77363469,2	K562	blood:
6	chr15:77320639..77324428-chr15:77362244..77364696,3	K562	blood:
7	chr15:77357220..77360797-chr15:77361367..77364060,6	MCF-7	breast:
8	chr15:77334649..77338471-chr15:77361377..77364899,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PEAK1.1-3	chr15:77362209-77362400	NONHSAT047422

Variant related genes	Relation type
ENSG00000269951	TF binding region
ENSG00000140386	Chromatin interaction
ENSG00000260787	Chromatin interaction
ENSG00000259652	Chromatin interaction
ENSG00000269951	Chromatin interaction
ENSG00000140374	Chromatin interaction
ENSG00000140368	Chromatin interaction
ENSG00000140391	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	esv3423899	chr15:77362122-77364670	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77359000-77362400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:77361200-77362600	Flanking Active TSS	Duodenum Mucosa	Duodenum
3	chr15:77361200-77362600	Weak transcription	Small Intestine	intestine
4	chr15:77361400-77363000	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr15:77361400-77363600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:77361600-77362400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:77361600-77362400	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
8	chr15:77361600-77362600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:77361600-77362800	Flanking Active TSS	HUVEC	blood vessel
10	chr15:77361600-77363600	Active TSS	Fetal Intestine Large	intestine
11	chr15:77361600-77363800	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr15:77361800-77362400	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:77361800-77362400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:77361800-77362400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr15:77361800-77362400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr15:77361800-77362400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:77361800-77362400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:77361800-77362400	Flanking Active TSS	Psoas Muscle	Psoas
19	chr15:77361800-77362400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr15:77361800-77362400	Flanking Active TSS	A549	lung
21	chr15:77361800-77362400	Flanking Active TSS	Dnd41	blood
22	chr15:77361800-77362400	Flanking Active TSS	HSMM	muscle
23	chr15:77361800-77362600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr15:77361800-77362600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr15:77361800-77362600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:77361800-77362600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:77361800-77362600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
28	chr15:77361800-77362600	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr15:77361800-77362600	Flanking Active TSS	HepG2	liver
30	chr15:77361800-77362600	Flanking Active TSS	HMEC	breast
31	chr15:77361800-77362600	Flanking Active TSS	NH-A	brain
32	chr15:77361800-77362800	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr15:77361800-77362800	Flanking Active TSS	Liver	Liver
34	chr15:77361800-77362800	Transcr. at gene 5' and 3'	Fetal Lung	lung
35	chr15:77361800-77362800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr15:77361800-77362800	Flanking Active TSS	GM12878-XiMat	blood
37	chr15:77361800-77363000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:77361800-77363400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:77361800-77363400	Active TSS	Fetal Muscle Trunk	muscle
40	chr15:77361800-77363600	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr15:77361800-77363600	Active TSS	Ovary	ovary
42	chr15:77361800-77363600	Active TSS	Pancreas	Pancrea
43	chr15:77361800-77363600	Active TSS	NHDF-Ad	bronchial
44	chr15:77362000-77362400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr15:77362000-77362400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
46	chr15:77362000-77362400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
47	chr15:77362000-77362400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:77362000-77362400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr15:77362000-77362400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
50	chr15:77362000-77362400	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links