Variant report

Variant	esv3423899
Chromosome Location	chr15:77362122-77364670
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr15:77363295-77363664	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr15:77362785-77363076	H1-hESC	embryonic stem cell:	n/a	n/a
3	BHLHE40	chr15:77363531-77363618	GM12878	blood:	n/a	n/a
4	BHLHE40	chr15:77363343-77363943	K562	blood:	n/a	n/a
5	BRCA1	chr15:77363345-77363430	HepG2	liver:	n/a	n/a
6	BRCA1	chr15:77363404-77363708	Hela-S3	cervix:	n/a	n/a
7	CCNT2	chr15:77362649-77363674	K562	blood:	n/a	chr15:77363435-77363444
8	CEBPB	chr15:77363191-77363263	HepG2	liver:	n/a	n/a
9	CEBPB	chr15:77363898-77364216	A549	lung:	n/a	n/a
10	CEBPB	chr15:77362449-77364213	Hela-S3	cervix:	n/a	chr15:77363544-77363552
11	CEBPB	chr15:77362563-77362576	HepG2	liver:	n/a	n/a
12	CEBPB	chr15:77362835-77363397	IMR90	lung:	n/a	n/a
13	CEBPD	chr15:77363180-77363621	HepG2	liver:	n/a	n/a
14	CHD1	chr15:77362627-77362648	H1-hESC	embryonic stem cell:	n/a	n/a
15	CHD1	chr15:77362654-77362850	GM12878	blood:	n/a	n/a
16	CHD2	chr15:77362797-77363740	Hela-S3	cervix:	n/a	chr15:77363605-77363612 chr15:77362925-77362935
17	CHD2	chr15:77363343-77363729	GM12878	blood:	n/a	chr15:77363605-77363612
18	CHD2	chr15:77362726-77362880	H1-hESC	embryonic stem cell:	n/a	n/a
19	CHD2	chr15:77363260-77363705	K562	blood:	n/a	chr15:77363605-77363612
20	CHD2	chr15:77363390-77363677	H1-hESC	embryonic stem cell:	n/a	chr15:77363605-77363612
21	CHD2	chr15:77363377-77363652	HepG2	liver:	n/a	chr15:77363605-77363612
22	CREB1	chr15:77363367-77363602	A549	lung:	n/a	n/a
23	CREB1	chr15:77363123-77363769	A549	lung:	n/a	n/a
24	CREB1	chr15:77363180-77363727	GM12878	blood:	n/a	n/a
25	CREB1	chr15:77362653-77363103	A549	lung:	n/a	n/a
26	CTCF	chr15:77363437-77363616	Spleen_OC	spleen:	n/a	n/a
27	CTCF	chr15:77362660-77362810	BJ	skin:	n/a	n/a
28	CTCF	chr15:77363440-77363577	Lung_OC	lung:	n/a	n/a
29	CTCF	chr15:77363379-77363633	GM12878	blood:	n/a	n/a
30	CTCF	chr15:77362640-77362790	GM12869	blood:	n/a	n/a
31	E2F1	chr15:77362724-77363650	Hela-S3	cervix:	n/a	chr15:77363543-77363552 chr15:77363605-77363612 chr15:77363467-77363477 chr15:77362939-77362949
32	E2F4	chr15:77363341-77363778	MCF10A-Er-Src	breast:	n/a	chr15:77363543-77363552 chr15:77363605-77363612 chr15:77363467-77363477
33	E2F4	chr15:77362685-77362962	MCF10A-Er-Src	breast:	n/a	chr15:77362939-77362949
34	E2F4	chr15:77362797-77363670	K562	blood:	n/a	chr15:77363543-77363552 chr15:77363605-77363612 chr15:77363467-77363477 chr15:77362939-77362949
35	E2F6	chr15:77363271-77363600	K562	blood:	n/a	chr15:77363543-77363552 chr15:77363467-77363477
36	E2F6	chr15:77363241-77363680	A549	lung:	n/a	chr15:77363543-77363552 chr15:77363605-77363612 chr15:77363467-77363477
37	E2F6	chr15:77363190-77363793	A549	lung:	n/a	chr15:77363543-77363552 chr15:77363605-77363612 chr15:77363467-77363477
38	E2F6	chr15:77362910-77363158	K562	blood:	n/a	chr15:77362939-77362949
39	E2F6	chr15:77363316-77363734	H1-hESC	embryonic stem cell:	n/a	chr15:77363543-77363552 chr15:77363605-77363612 chr15:77363467-77363477
40	E2F6	chr15:77362714-77363712	K562	blood:	n/a	chr15:77363543-77363552 chr15:77363605-77363612 chr15:77363467-77363477 chr15:77362939-77362949
41	E2F6	chr15:77362680-77363662	K562	blood:	n/a	chr15:77363543-77363552 chr15:77363605-77363612 chr15:77363467-77363477 chr15:77362939-77362949
42	EBF1	chr15:77363385-77363810	GM12878	blood:	n/a	chr15:77363646-77363656 chr15:77363645-77363658 chr15:77363645-77363656 chr15:77363647-77363656 chr15:77363647-77363657
43	EBF1	chr15:77363374-77363854	GM12878	blood:	n/a	chr15:77363646-77363656 chr15:77363645-77363658 chr15:77363645-77363656 chr15:77363647-77363656 chr15:77363647-77363657
44	EBF1	chr15:77363440-77363854	GM12878	blood:	n/a	chr15:77363646-77363656 chr15:77363645-77363658 chr15:77363645-77363656 chr15:77363647-77363656 chr15:77363647-77363657
45	EGR1	chr15:77362758-77363118	ECC-1	luminal epithelium:	n/a	n/a
46	EGR1	chr15:77362823-77363211	GM12878	blood:	n/a	n/a
47	EGR1	chr15:77362791-77363284	K562	blood:	n/a	n/a
48	EGR1	chr15:77362879-77363071	GM12878	blood:	n/a	n/a
49	EGR1	chr15:77362739-77363249	K562	blood:	n/a	n/a
50	EGR1	chr15:77363388-77363702	K562	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:77362853-77362903	HCF	heart:	n/a
2	chr15:77363627-77363677	SK-N-SH	brain:	n/a
3	chr15:77363299-77363349	IMR90	lung:	fetal
4	chr15:77362853-77362903	HCF	heart:	n/a
5	chr15:77363627-77363677	SK-N-SH	brain:	n/a
6	chr15:77363299-77363349	IMR90	lung:	fetal
7	chr15:77363627-77363677	HCT-116	colon:	n/a
8	chr15:77362853-77362903	RPTEC	kidney:	n/a
9	chr15:77363299-77363349	HAEpiC	amniotic membrane:	n/a
10	chr15:77362853-77362903	SK-N-MC	brain:	n/a
11	chr15:77362720-77362770	NHBE	bronchial:	n/a
12	chr15:77363627-77363677	Jurkat	blood:	n/a
13	chr15:77363299-77363349	SAEC	small airway:	n/a
14	chr15:77363192-77363242	AG09319	gingival:	n/a
15	chr15:77363192-77363242	NB4	blood:	n/a
16	chr15:77362853-77362903	HNPCEpiC	eye:	n/a
17	chr15:77363192-77363242	SK-N-SH	brain:	n/a
18	chr15:77364519-77364569	AG10803	skin:	n/a
19	chr15:77362853-77362903	CMK	blood:	n/a
20	chr15:77362853-77362903	SAEC	small airway:	n/a
21	chr15:77363299-77363349	GM12878	blood:	n/a
22	chr15:77364519-77364569	K562	blood:	n/a
23	chr15:77362853-77362903	NH-A	brain:	n/a
24	chr15:77363627-77363677	BJ	skin:	n/a
25	chr15:77363299-77363349	BE2_C	brain:	n/a
26	chr15:77362853-77362903	GM12891	blood:	n/a
27	chr15:77362853-77362903	GM12892	blood:	n/a
28	chr15:77362853-77362903	BE2_C	brain:	n/a
29	chr15:77363299-77363349	LNCaP	prostate:	n/a
30	chr15:77363192-77363242	HEK293	kidney:	embryo
31	chr15:77364519-77364569	Caco-2	colon:	n/a
32	chr15:77363299-77363349	NHDF-neo	bronchial:	n/a
33	chr15:77362720-77362770	HepG2	liver:	n/a
34	chr15:77364519-77364569	NH-A	brain:	n/a
35	chr15:77363192-77363242	MCF-7	breast:	n/a
36	chr15:77363192-77363242	NT2-D1	testis:	n/a
37	chr15:77363627-77363677	AG10803	skin:	n/a
38	chr15:77364519-77364569	NHDF-neo	bronchial:	n/a
39	chr15:77363192-77363242	Jurkat	blood:	n/a
40	chr15:77364519-77364569	SK-N-SH	brain:	n/a
41	chr15:77362720-77362770	T-47D	breast:	n/a
42	chr15:77362853-77362903	MCF10A-Er-Src	breast:	n/a
43	chr15:77364519-77364569	AG04450	lung:	fetal
44	chr15:77363299-77363349	ProgFib	skin:	n/a
45	chr15:77363299-77363349	HEEpiC	esophagus:	n/a
46	chr15:77364519-77364569	HEEpiC	esophagus:	n/a
47	chr15:77362853-77362903	ECC-1	luminal epithelium:	n/a
48	chr15:77363627-77363677	HUVEC	blood vessel:	n/a
49	chr15:77362720-77362770	GM19239	blood:	n/a
50	chr15:77362720-77362770	HCM	heart:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:77362106..77364633-chr15:77375983..77377903,3	MCF-7	breast:
2	chr15:77196909..77199186-chr15:77360659..77363469,2	K562	blood:
3	chr15:77334649..77338471-chr15:77361377..77364899,5	K562	blood:
4	chr15:77327141..77328063-chr15:77362386..77363086,2	MCF-7	breast:
5	chr15:77362899..77363478-chr4:88141336..88142074,2	NB4	blood:
6	chr15:77357220..77360797-chr15:77361367..77364060,6	MCF-7	breast:
7	chr15:77334559..77338244-chr15:77361377..77364599,4	K562	blood:
8	chr15:77320639..77324428-chr15:77362244..77364696,3	K562	blood:
9	chr15:76602919..76604847-chr15:77361875..77364736,2	K562	blood:
10	chr12:122240911..122241575-chr15:77363083..77363808,2	NB4	blood:
11	chr15:77359065..77361270-chr15:77362713..77364449,3	K562	blood:
12	chr15:77195708..77198409-chr15:77360659..77363583,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PEAK1.1-3	chr15:77363234-77363434	NONHSAT047422
2	lnc-PEAK1.1-3	chr15:77362209-77362400	NONHSAT047422

Variant related genes	Relation type
TSPAN3	TF binding region
ENSG00000269951	TF binding region
TSPAN3	CpG island
ENSG00000269951	CpG island
ENSG00000145332	chromatin interactions
ENSG00000259652	chromatin interactions
ENSG00000140368	chromatin interactions
ENSG00000140391	chromatin interactions
ENSG00000139725	chromatin interactions
ENSG00000212694	chromatin interactions
ENSG00000140386	chromatin interactions
ENSG00000260787	chromatin interactions
ENSG00000269951	chromatin interactions
ENSG00000140374	chromatin interactions

Extended variants
information (count: 84 )
Associated
traits (count: 51 )

Variant overlapped rSNPs/rCNVs (count:84 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191937196	chr15:77362127-77362128	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
2	rs535206515	chr15:77362132-77362133	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
3	rs146913167	chr15:77362174-77362175	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
4	rs539457233	chr15:77362176-77362177	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
5	rs551052926	chr15:77362179-77362180	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
6	rs566765689	chr15:77362190-77362191	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
7	rs529189554	chr15:77362207-77362208	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
8	rs533842137	chr15:77362259-77362260	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
9	rs555395484	chr15:77362277-77362278	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
10	rs115283880	chr15:77362353-77362354	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
11	rs535583497	chr15:77362367-77362368	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
12	rs147946884	chr15:77362385-77362386	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
13	rs533290781	chr15:77362407-77362408	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
14	rs575292873	chr15:77362413-77362414	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
15	rs546181688	chr15:77362418-77362419	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
16	rs143526090	chr15:77362422-77362423	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
17	rs564318968	chr15:77362440-77362441	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
18	rs573518357	chr15:77362455-77362456	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
19	rs540551820	chr15:77362472-77362473	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
20	rs562294046	chr15:77362531-77362532	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
21	rs529531435	chr15:77362590-77362591	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
22	rs551162601	chr15:77362599-77362600	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
23	rs543577171	chr15:77362650-77362651	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
24	rs182953847	chr15:77362681-77362682	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
25	rs533014741	chr15:77362702-77362703	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
26	rs551405490	chr15:77362816-77362817	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
27	rs188171981	chr15:77362835-77362836	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
28	rs563674690	chr15:77362846-77362847	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
29	rs192771832	chr15:77362865-77362866	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
30	rs146229066	chr15:77362925-77362926	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
31	rs112279626	chr15:77362926-77362927	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
32	rs577102787	chr15:77362927-77362928	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
33	rs567197491	chr15:77362928-77362929	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
34	rs188987305	chr15:77362929-77362930	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
35	rs575380238	chr15:77362944-77362945	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
36	rs539541060	chr15:77362967-77362968	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
37	rs558163793	chr15:77363048-77363049	Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
38	rs573130938	chr15:77363063-77363064	Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
39	rs376361251	chr15:77363088-77363089	Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
40	rs540590564	chr15:77363168-77363169	Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
41	rs557724502	chr15:77363222-77363223	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
42	rs562382033	chr15:77363257-77363258	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	10 gene(s)	Overlapped CNVs	n/a
43	rs111428129	chr15:77363263-77363264	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	10 gene(s)	Overlapped CNVs	n/a
44	rs11550571	chr15:77363271-77363272	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	10 gene(s)	Overlapped CNVs	n/a
45	rs370870576	chr15:77363325-77363326	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	Overlapped CNVs	n/a
46	rs544825908	chr15:77363333-77363334	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	Overlapped CNVs	n/a
47	rs143420638	chr15:77363335-77363336	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	Overlapped CNVs	n/a
48	rs533088582	chr15:77363366-77363367	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	10 gene(s)	Overlapped CNVs	n/a
49	rs551174565	chr15:77363394-77363395	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a
50	rs560122525	chr15:77363434-77363435	Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:51)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:475 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77358600-77362200	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr15:77359000-77362400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:77359400-77362200	Enhancers	K562	blood
4	chr15:77361200-77362600	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr15:77361200-77362600	Weak transcription	Small Intestine	intestine
6	chr15:77361400-77363000	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr15:77361400-77363600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:77361600-77362200	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:77361600-77362200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:77361600-77362200	Enhancers	Primary T cells from cord blood	blood
11	chr15:77361600-77362400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:77361600-77362400	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
13	chr15:77361600-77362600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:77361600-77362800	Flanking Active TSS	HUVEC	blood vessel
15	chr15:77361600-77363600	Active TSS	Fetal Intestine Large	intestine
16	chr15:77361600-77363800	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr15:77361800-77362200	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
18	chr15:77361800-77362200	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr15:77361800-77362200	Flanking Active TSS	Right Atrium	heart
20	chr15:77361800-77362200	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr15:77361800-77362200	Flanking Active TSS	NHLF	lung
22	chr15:77361800-77362400	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:77361800-77362400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:77361800-77362400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr15:77361800-77362400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr15:77361800-77362400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:77361800-77362400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:77361800-77362400	Flanking Active TSS	Psoas Muscle	Psoas
29	chr15:77361800-77362400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr15:77361800-77362400	Flanking Active TSS	A549	lung
31	chr15:77361800-77362400	Flanking Active TSS	Dnd41	blood
32	chr15:77361800-77362400	Flanking Active TSS	HSMM	muscle
33	chr15:77361800-77362600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr15:77361800-77362600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr15:77361800-77362600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:77361800-77362600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:77361800-77362600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr15:77361800-77362600	Flanking Active TSS	Colon Smooth Muscle	Colon
39	chr15:77361800-77362600	Flanking Active TSS	HepG2	liver
40	chr15:77361800-77362600	Flanking Active TSS	HMEC	breast
41	chr15:77361800-77362600	Flanking Active TSS	NH-A	brain
42	chr15:77361800-77362800	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr15:77361800-77362800	Flanking Active TSS	Liver	Liver
44	chr15:77361800-77362800	Transcr. at gene 5' and 3'	Fetal Lung	lung
45	chr15:77361800-77362800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr15:77361800-77362800	Flanking Active TSS	GM12878-XiMat	blood
47	chr15:77361800-77363000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:77361800-77363400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:77361800-77363400	Active TSS	Fetal Muscle Trunk	muscle
50	chr15:77361800-77363600	Active TSS	Pancreatic Islets	Pancreatic Islet

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