Variant report

Variant	rs533014741
Chromosome Location	chr15:77362702-77362703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:77362566-77363799	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr15:77362661-77363665	GM12892	blood:	n/a	n/a
3	POLR2A	chr15:77362614-77363078	SK-N-MC	brain:	n/a	n/a
4	MAZ	chr15:77362078-77364243	IMR90	lung:	n/a	chr15:77363522-77363531 chr15:77362963-77362972
5	POLR2A	chr15:77361656-77363688	MCF10A-Er-Src	breast:	n/a	n/a
6	MXI1	chr15:77362694-77362963	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr15:77362663-77363727	GM18505	blood:	n/a	n/a
8	MAZ	chr15:77362701-77363768	GM12878	blood:	n/a	chr15:77363522-77363531 chr15:77362963-77362972
9	ELF1	chr15:77362605-77363083	GM12878	blood:	n/a	chr15:77362976-77362985 chr15:77362758-77362770 chr15:77362753-77362765
10	POLR2A	chr15:77361797-77363764	MCF10A-Er-Src	breast:	n/a	n/a
11	POLR2A	chr15:77362641-77363687	K562	blood:	n/a	n/a
12	ZNF263	chr15:77361810-77363810	HEK293-T-REx	kidney:	n/a	chr15:77362104-77362125 chr15:77362118-77362127 chr15:77362103-77362112 chr15:77362055-77362064
13	CTCF	chr15:77362660-77362810	BJ	skin:	n/a	n/a
14	POLR2A	chr15:77362681-77363610	HL-60	blood:	n/a	n/a
15	MXI1	chr15:77362487-77364143	IMR90	lung:	n/a	n/a
16	CTCF	chr15:77362640-77362790	GM12869	blood:	n/a	n/a
17	POLR2A	chr15:77362624-77363665	GM19193	blood:	n/a	n/a
18	MAX	chr15:77362620-77363820	ECC-1	luminal epithelium:	n/a	chr15:77363522-77363531 chr15:77362963-77362972
19	POLR2A	chr15:77362690-77363630	A549	lung:	n/a	n/a
20	POLR2A	chr15:77362636-77363696	HUVEC	blood vessel:	n/a	n/a
21	YY1	chr15:77362633-77363108	K562	blood:	n/a	chr15:77362970-77362984
22	NFIC	chr15:77362478-77363867	SK-N-SH	brain:	n/a	chr15:77362944-77362961
23	MAX	chr15:77362393-77363939	A549	lung:	n/a	chr15:77363522-77363531 chr15:77362963-77362972
24	MAX	chr15:77362636-77363170	SK-N-SH	brain:	n/a	chr15:77362963-77362972
25	POLR2A	chr15:77362671-77363754	GM12892	blood:	n/a	n/a
26	POLR2A	chr15:77362685-77363749	ECC-1	luminal epithelium:	n/a	n/a
27	CHD1	chr15:77362654-77362850	GM12878	blood:	n/a	n/a
28	POLR2A	chr15:77362635-77363746	Hela-S3	cervix:	n/a	n/a
29	HCFC1	chr15:77362158-77364773	Hela-S3	cervix:	n/a	n/a
30	REST	chr15:77362480-77363835	H1-neurons	neurons:	n/a	chr15:77363024-77363037
31	SIN3AK20	chr15:77362576-77363569	PANC-1	pancreas:	n/a	n/a
32	HA-E2F1	chr15:77362570-77363977	MCF-7	breast:	n/a	chr15:77363543-77363552 chr15:77363605-77363612 chr15:77363467-77363477 chr15:77362939-77362949
33	POLR2A	chr15:77362564-77363709	Hela-S3	cervix:	n/a	n/a
34	RFX5	chr15:77362435-77363947	Hela-S3	cervix:	n/a	chr15:77363501-77363516 chr15:77363502-77363516 chr15:77363504-77363513
35	MAX	chr15:77362614-77363777	K562	blood:	n/a	chr15:77363522-77363531 chr15:77362963-77362972
36	CEBPB	chr15:77362449-77364213	Hela-S3	cervix:	n/a	chr15:77363544-77363552
37	E2F6	chr15:77362680-77363662	K562	blood:	n/a	chr15:77363543-77363552 chr15:77363605-77363612 chr15:77363467-77363477 chr15:77362939-77362949
38	POLR2A	chr15:77362582-77362976	H1-neurons	neurons:	n/a	n/a
39	GATA1	chr15:77362127-77363719	PBDE	blood:	n/a	chr15:77362457-77362467 chr15:77362454-77362466 chr15:77362457-77362464 chr15:77362455-77362465
40	UBTF	chr15:77362393-77363862	K562	blood:	n/a	n/a
41	MYC	chr15:77362317-77363767	K562	blood:	n/a	chr15:77363522-77363531 chr15:77362963-77362972
42	NFIC	chr15:77362572-77363252	SK-N-SH	brain:	n/a	chr15:77362944-77362961
43	POLR2A	chr15:77362700-77363659	GM12878	blood:	n/a	n/a
44	JUND	chr15:77362097-77363072	K562	blood:	n/a	chr15:77362215-77362224
45	CCNT2	chr15:77362649-77363674	K562	blood:	n/a	chr15:77363435-77363444
46	POLR2A	chr15:77362610-77363716	HL-60	blood:	n/a	n/a
47	TAL1	chr15:77362200-77363435	K562	blood:	n/a	n/a
48	MAX	chr15:77362670-77363744	NB4	blood:	n/a	chr15:77363522-77363531 chr15:77362963-77362972
49	JUND	chr15:77362630-77363618	A549	lung:	n/a	chr15:77363314-77363328
50	POLR2A	chr15:77362576-77363664	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:77195708..77198409-chr15:77360659..77363583,2	K562	blood:
2	chr15:77327141..77328063-chr15:77362386..77363086,2	MCF-7	breast:
3	chr15:77334559..77338244-chr15:77361377..77364599,4	K562	blood:
4	chr15:77362106..77364633-chr15:77375983..77377903,3	MCF-7	breast:
5	chr15:76602919..76604847-chr15:77361875..77364736,2	K562	blood:
6	chr15:77196909..77199186-chr15:77360659..77363469,2	K562	blood:
7	chr15:77320639..77324428-chr15:77362244..77364696,3	K562	blood:
8	chr15:77357220..77360797-chr15:77361367..77364060,6	MCF-7	breast:
9	chr15:77334649..77338471-chr15:77361377..77364899,5	K562	blood:

Variant related genes	Relation type
ENSG00000269951	TF binding region
ENSG00000140368	Chromatin interaction
ENSG00000140391	Chromatin interaction
ENSG00000260787	Chromatin interaction
ENSG00000140386	Chromatin interaction
ENSG00000140374	Chromatin interaction
ENSG00000269951	Chromatin interaction
ENSG00000259652	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	esv3423899	chr15:77362122-77364670	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77361400-77363000	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr15:77361400-77363600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:77361600-77362800	Flanking Active TSS	HUVEC	blood vessel
4	chr15:77361600-77363600	Active TSS	Fetal Intestine Large	intestine
5	chr15:77361600-77363800	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr15:77361800-77362800	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr15:77361800-77362800	Flanking Active TSS	Liver	Liver
8	chr15:77361800-77362800	Transcr. at gene 5' and 3'	Fetal Lung	lung
9	chr15:77361800-77362800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr15:77361800-77362800	Flanking Active TSS	GM12878-XiMat	blood
11	chr15:77361800-77363000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:77361800-77363400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:77361800-77363400	Active TSS	Fetal Muscle Trunk	muscle
14	chr15:77361800-77363600	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr15:77361800-77363600	Active TSS	Ovary	ovary
16	chr15:77361800-77363600	Active TSS	Pancreas	Pancrea
17	chr15:77361800-77363600	Active TSS	NHDF-Ad	bronchial
18	chr15:77362000-77362800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr15:77362000-77362800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr15:77362000-77362800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:77362000-77362800	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
22	chr15:77362000-77362800	Flanking Active TSS	Thymus	Thymus
23	chr15:77362000-77362800	Flanking Active TSS	Osteobl	bone
24	chr15:77362000-77363000	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr15:77362000-77363000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr15:77362000-77363000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:77362000-77363200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:77362000-77363400	Active TSS	Stomach Mucosa	stomach
29	chr15:77362000-77363600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:77362000-77363600	Active TSS	Lung	lung
31	chr15:77362200-77362800	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr15:77362200-77362800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr15:77362200-77362800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr15:77362200-77362800	Flanking Active TSS	K562	blood
35	chr15:77362200-77363000	Active TSS	Right Atrium	heart
36	chr15:77362200-77363000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr15:77362200-77363400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr15:77362200-77363400	Active TSS	Esophagus	oesophagus
39	chr15:77362200-77363600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:77362200-77363600	Active TSS	H9 Cell Line	embryonic stem cell
41	chr15:77362200-77363600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:77362200-77363600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:77362200-77363600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:77362200-77363600	Active TSS	Brain Germinal Matrix	brain
45	chr15:77362200-77363600	Active TSS	Gastric	stomach
46	chr15:77362200-77363600	Active TSS	Left Ventricle	heart
47	chr15:77362200-77363600	Active TSS	Stomach Smooth Muscle	stomach
48	chr15:77362200-77363600	Active TSS	NHLF	lung
49	chr15:77362400-77362800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
50	chr15:77362400-77362800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links