Variant report

Variant	rs551052926
Chromosome Location	chr15:77362179-77362180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:77362044-77362182	ProgFib	skin:	n/a	n/a
2	MAZ	chr15:77362078-77364243	IMR90	lung:	n/a	chr15:77363522-77363531 chr15:77362963-77362972
3	POLR2A	chr15:77362056-77362312	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr15:77361656-77363688	MCF10A-Er-Src	breast:	n/a	n/a
5	NR3C1	chr15:77362004-77362307	A549	lung:	n/a	chr15:77362183-77362200 chr15:77362154-77362169
6	POLR2A	chr15:77361797-77363764	MCF10A-Er-Src	breast:	n/a	n/a
7	TCF12	chr15:77361704-77362420	A549	lung:	n/a	n/a
8	STAT3	chr15:77362074-77362316	MCF10A-Er-Src	breast:	n/a	n/a
9	MAFK	chr15:77362130-77362282	K562	blood:	n/a	n/a
10	ZNF263	chr15:77361810-77363810	HEK293-T-REx	kidney:	n/a	chr15:77362104-77362125 chr15:77362118-77362127 chr15:77362103-77362112 chr15:77362055-77362064
11	POLR2A	chr15:77361601-77362329	SK-N-MC	brain:	n/a	n/a
12	MYC	chr15:77362076-77362264	MCF10A-Er-Src	breast:	n/a	n/a
13	RCOR1	chr15:77362041-77362512	K562	blood:	n/a	n/a
14	NR3C1	chr15:77361928-77362440	A549	lung:	n/a	chr15:77362183-77362200 chr15:77362154-77362169
15	HCFC1	chr15:77362158-77364773	Hela-S3	cervix:	n/a	n/a
16	POLR2A	chr15:77361751-77362239	HepG2	liver:	n/a	n/a
17	NR3C1	chr15:77361921-77362339	A549	lung:	n/a	chr15:77362183-77362200 chr15:77362154-77362169
18	STAT3	chr15:77361943-77362407	MCF10A-Er-Src	breast:	n/a	n/a
19	GATA1	chr15:77362127-77363719	PBDE	blood:	n/a	chr15:77362457-77362467 chr15:77362454-77362466 chr15:77362457-77362464 chr15:77362455-77362465
20	STAT3	chr15:77361984-77362501	MCF10A-Er-Src	breast:	n/a	n/a
21	EGR1	chr15:77361878-77362208	K562	blood:	n/a	chr15:77362093-77362106 chr15:77362092-77362107 chr15:77362049-77362062 chr15:77362095-77362105 chr15:77362089-77362111 chr15:77362093-77362107 chr15:77362094-77362105 chr15:77362095-77362105 chr15:77362094-77362105
22	JUND	chr15:77362097-77363072	K562	blood:	n/a	chr15:77362215-77362224
23	POLR2A	chr15:77362174-77362185	HUVEC	blood vessel:	n/a	n/a
24	NR3C1	chr15:77362031-77362233	ECC-1	luminal epithelium:	n/a	chr15:77362183-77362200 chr15:77362154-77362169
25	MXI1	chr15:77361714-77364220	SK-N-SH	brain:	n/a	n/a
26	POLR2A	chr15:77361739-77363695	HepG2	liver:	n/a	n/a
27	STAT3	chr15:77362041-77362359	MCF10A-Er-Src	breast:	n/a	n/a
28	NR3C1	chr15:77361978-77362312	A549	lung:	n/a	chr15:77362183-77362200 chr15:77362154-77362169

No.	Distal block	Cell Line	Cell type
1	chr15:77195708..77198409-chr15:77360659..77363583,2	K562	blood:
2	chr15:77334559..77338244-chr15:77361377..77364599,4	K562	blood:
3	chr15:77362106..77364633-chr15:77375983..77377903,3	MCF-7	breast:
4	chr15:76602919..76604847-chr15:77361875..77364736,2	K562	blood:
5	chr15:77196909..77199186-chr15:77360659..77363469,2	K562	blood:
6	chr15:77357220..77360797-chr15:77361367..77364060,6	MCF-7	breast:
7	chr15:77334649..77338471-chr15:77361377..77364899,5	K562	blood:

Variant related genes	Relation type
ENSG00000269951	TF binding region
ENSG00000269951	Chromatin interaction
ENSG00000259652	Chromatin interaction
ENSG00000260787	Chromatin interaction
ENSG00000140374	Chromatin interaction
ENSG00000140391	Chromatin interaction
ENSG00000140386	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	esv3423899	chr15:77362122-77364670	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77358600-77362200	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr15:77359000-77362400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:77359400-77362200	Enhancers	K562	blood
4	chr15:77361200-77362600	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr15:77361200-77362600	Weak transcription	Small Intestine	intestine
6	chr15:77361400-77363000	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr15:77361400-77363600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:77361600-77362200	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:77361600-77362200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:77361600-77362200	Enhancers	Primary T cells from cord blood	blood
11	chr15:77361600-77362400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:77361600-77362400	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
13	chr15:77361600-77362600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:77361600-77362800	Flanking Active TSS	HUVEC	blood vessel
15	chr15:77361600-77363600	Active TSS	Fetal Intestine Large	intestine
16	chr15:77361600-77363800	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr15:77361800-77362200	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
18	chr15:77361800-77362200	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr15:77361800-77362200	Flanking Active TSS	Right Atrium	heart
20	chr15:77361800-77362200	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr15:77361800-77362200	Flanking Active TSS	NHLF	lung
22	chr15:77361800-77362400	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:77361800-77362400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:77361800-77362400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr15:77361800-77362400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr15:77361800-77362400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:77361800-77362400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:77361800-77362400	Flanking Active TSS	Psoas Muscle	Psoas
29	chr15:77361800-77362400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr15:77361800-77362400	Flanking Active TSS	A549	lung
31	chr15:77361800-77362400	Flanking Active TSS	Dnd41	blood
32	chr15:77361800-77362400	Flanking Active TSS	HSMM	muscle
33	chr15:77361800-77362600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr15:77361800-77362600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr15:77361800-77362600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:77361800-77362600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:77361800-77362600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr15:77361800-77362600	Flanking Active TSS	Colon Smooth Muscle	Colon
39	chr15:77361800-77362600	Flanking Active TSS	HepG2	liver
40	chr15:77361800-77362600	Flanking Active TSS	HMEC	breast
41	chr15:77361800-77362600	Flanking Active TSS	NH-A	brain
42	chr15:77361800-77362800	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr15:77361800-77362800	Flanking Active TSS	Liver	Liver
44	chr15:77361800-77362800	Transcr. at gene 5' and 3'	Fetal Lung	lung
45	chr15:77361800-77362800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr15:77361800-77362800	Flanking Active TSS	GM12878-XiMat	blood
47	chr15:77361800-77363000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:77361800-77363400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:77361800-77363400	Active TSS	Fetal Muscle Trunk	muscle
50	chr15:77361800-77363600	Active TSS	Pancreatic Islets	Pancreatic Islet

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