Variant report

Variant	rs115352788
Chromosome Location	chr9:93689370-93689371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93688980..93691627-chr9:93693965..93698752,5	MCF-7	breast:
2	chr9:93688437..93690680-chr9:93691698..93693614,2	MCF-7	breast:
3	chr9:93675146..93676974-chr9:93688801..93691517,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv416826	chr9:93688735-93698322	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93683000-93692000	Weak transcription	Right Ventricle	heart
2	chr9:93686000-93690200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:93686200-93689600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr9:93686800-93690200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:93687000-93690200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:93687200-93690000	Enhancers	NHLF	lung
7	chr9:93687400-93689800	Enhancers	Placenta	Placenta
8	chr9:93687400-93690000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:93687400-93690200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:93687600-93689800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:93687600-93690000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:93687600-93690000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:93687600-93690000	Enhancers	NHDF-Ad	bronchial
14	chr9:93687800-93690000	Enhancers	HMEC	breast
15	chr9:93688400-93689400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:93688400-93689800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:93688800-93689800	Enhancers	NH-A	brain
18	chr9:93689000-93690000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr9:93689200-93689600	Enhancers	A549	lung
20	chr9:93689200-93689800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:93689200-93690200	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links