Variant report

Variant	nsv416826
Chromosome Location	chr9:93688735-93698322
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93692079..93694930-chr9:93695020..93697604,3	MCF-7	breast:
2	chr9:93688437..93690680-chr9:93691698..93693614,2	MCF-7	breast:
3	chr9:93692079..93694930-chr9:93695020..93697604,3	MCF-7	breast:
4	chr9:93685464..93688726-chr9:93695370..93697391,4	MCF-7	breast:
5	chr9:93688437..93690680-chr9:93691698..93693614,2	MCF-7	breast:
6	chr9:93694606..93697511-chr9:93699308..93700844,2	MCF-7	breast:
7	chr9:93688980..93691627-chr9:93693965..93698752,5	MCF-7	breast:
8	chr9:93688980..93691627-chr9:93693965..93698752,5	MCF-7	breast:
9	chr9:93675146..93676974-chr9:93688801..93691517,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYK-1	chr9:93695452-93695555	XLOC_007453
2	lnc-SYK-1	chr9:93695308-93695321	XLOC_007453
3	lnc-SYK-1	chr9:93696243-93696328	XLOC_007453

No data

Variant related genes	Relation type
SOX4	miRNA target sites
CCND3	miRNA target sites
SLC45A3	miRNA target sites

Extended variants
information (count: 352 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:352 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs114766313	chr9:93688743-93688744	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs552978890	chr9:93688786-93688787	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs557033446	chr9:93688813-93688814	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs573603674	chr9:93688873-93688874	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs542512518	chr9:93688878-93688879	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs77355858	chr9:93689011-93689012	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs138628391	chr9:93689033-93689034	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs544846832	chr9:93689046-93689047	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs565005521	chr9:93689068-93689069	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs1675302	chr9:93689104-93689105	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs187632623	chr9:93689205-93689206	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs192166802	chr9:93689210-93689211	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs28476556	chr9:93689214-93689215	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs575399189	chr9:93689217-93689218	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs374868160	chr9:93689231-93689232	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs7861954	chr9:93689265-93689266	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs183936935	chr9:93689324-93689325	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs189184615	chr9:93689343-93689344	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs148903195	chr9:93689362-93689363	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs115352788	chr9:93689370-93689371	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs537105497	chr9:93689444-93689445	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs192855007	chr9:93689550-93689551	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs573496252	chr9:93689554-93689555	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs573690017	chr9:93689555-93689556	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs536177162	chr9:93689585-93689586	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs552869557	chr9:93689654-93689655	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs572765083	chr9:93689715-93689716	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs564234977	chr9:93689716-93689717	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs545195023	chr9:93689720-93689721	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs79316750	chr9:93689738-93689739	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184500952	chr9:93689759-93689760	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs555799556	chr9:93689794-93689795	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543962240	chr9:93689800-93689801	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs10991696	chr9:93689819-93689820	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs529690959	chr9:93689820-93689821	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs370241799	chr9:93689821-93689822	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs374941001	chr9:93689864-93689865	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs368048675	chr9:93689992-93689993	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs546592957	chr9:93689998-93689999	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529231917	chr9:93690094-93690095	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs562484615	chr9:93690110-93690111	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs550686712	chr9:93690132-93690133	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs114632424	chr9:93690134-93690135	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs137897425	chr9:93690223-93690224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs528739424	chr9:93690228-93690229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs143469121	chr9:93690238-93690239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs571746859	chr9:93690246-93690247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs540151194	chr9:93690269-93690270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs147161342	chr9:93690296-93690297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs186972759	chr9:93690320-93690321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Mental retardation	21693067	CNVD
Glioma	17123091	CNVD
Mantle cell lymphoma	19029149	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93683000-93692000	Weak transcription	Right Ventricle	heart
2	chr9:93685600-93689200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:93686000-93690200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:93686200-93689600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:93686800-93690200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:93687000-93690200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:93687200-93689000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:93687200-93690000	Enhancers	NHLF	lung
9	chr9:93687400-93689800	Enhancers	Placenta	Placenta
10	chr9:93687400-93690000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:93687400-93690200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:93687600-93689000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:93687600-93689800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:93687600-93690000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:93687600-93690000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:93687600-93690000	Enhancers	NHDF-Ad	bronchial
17	chr9:93687800-93690000	Enhancers	HMEC	breast
18	chr9:93688200-93689200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:93688200-93689200	Weak transcription	A549	lung
20	chr9:93688200-93689200	Weak transcription	NHEK	skin
21	chr9:93688400-93688800	Weak transcription	NH-A	brain
22	chr9:93688400-93689400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:93688400-93689800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:93688800-93689800	Enhancers	NH-A	brain
25	chr9:93689000-93690000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr9:93689200-93689600	Enhancers	A549	lung
27	chr9:93689200-93689800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:93689200-93690200	Enhancers	NHEK	skin
29	chr9:93689400-93690000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:93690000-93692800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:93691800-93692800	Enhancers	Fetal Brain Female	brain
32	chr9:93691800-93692800	Enhancers	Fetal Heart	heart
33	chr9:93692000-93692200	Enhancers	Right Atrium	heart
34	chr9:93692000-93692600	Enhancers	Right Ventricle	heart
35	chr9:93692800-93701600	Weak transcription	Fetal Brain Female	brain
36	chr9:93694000-93694200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:93694800-93695000	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr9:93695000-93696400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr9:93696400-93696600	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr9:93696400-93697400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:93696600-93697000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr9:93696600-93697800	Enhancers	GM12878-XiMat	blood
43	chr9:93696600-93697800	Enhancers	HSMM	muscle
44	chr9:93697000-93697400	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr9:93697000-93697800	Enhancers	Dnd41	blood
46	chr9:93697200-93697400	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
47	chr9:93697200-93697600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:93697200-93697800	Enhancers	NH-A	brain
49	chr9:93697200-93698000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:93697200-93698600	Enhancers	HMEC	breast

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