Variant report

Variant	rs1675302
Chromosome Location	chr9:93689104-93689105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93688980..93691627-chr9:93693965..93698752,5	MCF-7	breast:
2	chr9:93688437..93690680-chr9:93691698..93693614,2	MCF-7	breast:
3	chr9:93675146..93676974-chr9:93688801..93691517,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1041381	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs158683	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1614353	0.82[ASN][1000 genomes]
rs1615082	0.82[ASN][1000 genomes]
rs167100	0.82[ASN][1000 genomes]
rs1675292	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675293	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675294	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675295	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675296	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675297	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675298	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1675306	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1675307	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1675312	0.82[ASN][1000 genomes]
rs1675313	0.82[ASN][1000 genomes]
rs169743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1755982	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1755983	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs184114	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs190029	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1964918	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2774255	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291746	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291747	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291749	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291752	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291754	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291755	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291758	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs291763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296653	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296654	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296656	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296658	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296659	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296660	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296662	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296670	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296674	0.91[EUR][1000 genomes]
rs296675	0.82[EUR][1000 genomes]
rs296678	0.91[EUR][1000 genomes]
rs296685	0.91[EUR][1000 genomes]
rs296687	0.91[EUR][1000 genomes]
rs296689	0.91[EUR][1000 genomes]
rs296692	0.91[EUR][1000 genomes]
rs296694	0.82[EUR][1000 genomes]
rs296697	0.91[EUR][1000 genomes]
rs296704	0.91[EUR][1000 genomes]
rs296705	0.91[EUR][1000 genomes]
rs296707	0.82[EUR][1000 genomes]
rs296712	0.82[EUR][1000 genomes]
rs296720	0.82[EUR][1000 genomes]
rs296723	0.82[EUR][1000 genomes]
rs296727	0.82[EUR][1000 genomes]
rs364622	0.91[EUR][1000 genomes]
rs376648	0.91[EUR][1000 genomes]
rs390574	0.91[EUR][1000 genomes]
rs426365	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv416826	chr9:93688735-93698322	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93683000-93692000	Weak transcription	Right Ventricle	heart
2	chr9:93685600-93689200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:93686000-93690200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:93686200-93689600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:93686800-93690200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:93687000-93690200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:93687200-93690000	Enhancers	NHLF	lung
8	chr9:93687400-93689800	Enhancers	Placenta	Placenta
9	chr9:93687400-93690000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:93687400-93690200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:93687600-93689800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:93687600-93690000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:93687600-93690000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:93687600-93690000	Enhancers	NHDF-Ad	bronchial
15	chr9:93687800-93690000	Enhancers	HMEC	breast
16	chr9:93688200-93689200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:93688200-93689200	Weak transcription	A549	lung
18	chr9:93688200-93689200	Weak transcription	NHEK	skin
19	chr9:93688400-93689400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:93688400-93689800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:93688800-93689800	Enhancers	NH-A	brain
22	chr9:93689000-93690000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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