Variant report

Variant	rs296707
Chromosome Location	chr9:93737291-93737292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93731886..93734151-chr9:93736139..93738687,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1041381	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1330682	1.00[CEU][hapmap]
rs1585459	0.93[YRI][hapmap]
rs158683	0.82[EUR][1000 genomes]
rs1675292	0.82[EUR][1000 genomes]
rs1675293	0.82[EUR][1000 genomes]
rs1675294	1.00[CEU][hapmap]
rs1675295	0.82[EUR][1000 genomes]
rs1675296	0.82[EUR][1000 genomes]
rs1675297	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1675298	0.82[EUR][1000 genomes]
rs1675302	0.82[EUR][1000 genomes]
rs1675303	0.82[EUR][1000 genomes]
rs1675305	0.82[EUR][1000 genomes]
rs1675306	0.82[EUR][1000 genomes]
rs1675307	0.82[EUR][1000 genomes]
rs169743	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1755982	0.82[EUR][1000 genomes]
rs1755983	0.82[EUR][1000 genomes]
rs184114	0.82[EUR][1000 genomes]
rs190029	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2774255	0.82[EUR][1000 genomes]
rs291746	0.82[EUR][1000 genomes]
rs291747	0.82[EUR][1000 genomes]
rs291749	0.82[EUR][1000 genomes]
rs291752	0.82[EUR][1000 genomes]
rs291754	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs291755	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs291757	0.82[EUR][1000 genomes]
rs291759	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs291761	0.82[EUR][1000 genomes]
rs291763	0.82[EUR][1000 genomes]
rs296653	0.82[EUR][1000 genomes]
rs296654	0.82[EUR][1000 genomes]
rs296656	0.82[EUR][1000 genomes]
rs296658	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs296659	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs296660	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs296662	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs296670	0.82[EUR][1000 genomes]
rs296674	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs296675	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs296678	0.91[EUR][1000 genomes]
rs296685	0.91[EUR][1000 genomes]
rs296687	0.91[EUR][1000 genomes]
rs296689	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs296692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs296694	0.82[EUR][1000 genomes]
rs296697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296704	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296705	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296706	1.00[ASN][1000 genomes]
rs296712	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs296720	0.82[EUR][1000 genomes]
rs296723	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs296727	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs364622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs376648	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs390574	0.91[EUR][1000 genomes]
rs426365	0.91[EUR][1000 genomes]
rs56413001	0.88[AFR][1000 genomes]
rs57135918	0.94[AFR][1000 genomes]
rs57191437	0.95[AFR][1000 genomes]
rs57595048	1.00[AFR][1000 genomes]
rs57619886	1.00[AFR][1000 genomes]
rs59101625	0.95[AFR][1000 genomes]
rs61052452	1.00[AFR][1000 genomes]
rs7035409	0.89[YRI][hapmap]
rs7042057	1.00[AFR][1000 genomes]
rs7047670	0.93[YRI][hapmap]
rs73490596	0.95[AFR][1000 genomes]
rs73492503	0.99[AFR][1000 genomes]
rs73492505	0.97[AFR][1000 genomes]
rs73492518	0.89[AFR][1000 genomes]
rs73653521	0.81[AFR][1000 genomes]
rs7855222	0.93[YRI][hapmap]
rs7859976	0.85[YRI][hapmap]
rs7860957	0.96[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93729600-93737600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93730400-93741600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:93731000-93737400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:93731200-93737400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:93731400-93737600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:93733000-93737600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr9:93733200-93738200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:93733800-93737800	Weak transcription	Fetal Thymus	thymus
9	chr9:93734800-93737800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:93736000-93737600	Enhancers	HMEC	breast
11	chr9:93736400-93740400	Enhancers	Dnd41	blood
12	chr9:93736800-93737600	Enhancers	Esophagus	oesophagus
13	chr9:93736800-93738000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:93737000-93737400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:93737000-93737600	Enhancers	Fetal Stomach	stomach
16	chr9:93737000-93738800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:93737000-93741000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:93737000-93741000	Weak transcription	NHEK	skin
19	chr9:93737200-93737400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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