Variant report

Variant	rs1675307
Chromosome Location	chr9:93698426-93698427
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93688980..93691627-chr9:93693965..93698752,5	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1041381	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1330682	1.00[CEU][hapmap]
rs158683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1675292	1.00[EUR][1000 genomes]
rs1675293	1.00[EUR][1000 genomes]
rs1675294	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1675295	1.00[EUR][1000 genomes]
rs1675296	1.00[EUR][1000 genomes]
rs1675297	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1675298	1.00[EUR][1000 genomes]
rs1675302	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1675303	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1675305	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1675306	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs169743	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1755982	1.00[EUR][1000 genomes]
rs1755983	1.00[EUR][1000 genomes]
rs184114	1.00[EUR][1000 genomes]
rs190029	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2774255	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291752	1.00[EUR][1000 genomes]
rs291754	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291755	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291757	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291758	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs291759	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291761	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291763	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs296653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs296654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs296656	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs296658	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs296659	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs296660	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs296662	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs296670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs296674	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs296675	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs296678	0.91[EUR][1000 genomes]
rs296685	0.91[EUR][1000 genomes]
rs296687	0.91[EUR][1000 genomes]
rs296689	0.91[EUR][1000 genomes]
rs296692	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs296694	0.82[EUR][1000 genomes]
rs296697	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs296704	0.91[EUR][1000 genomes]
rs296705	0.91[EUR][1000 genomes]
rs296707	0.82[EUR][1000 genomes]
rs296712	0.82[EUR][1000 genomes]
rs296720	0.82[EUR][1000 genomes]
rs296723	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs296727	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs364622	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs376648	0.91[EUR][1000 genomes]
rs390574	0.91[EUR][1000 genomes]
rs426365	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93692800-93701600	Weak transcription	Fetal Brain Female	brain
2	chr9:93697200-93698600	Enhancers	HMEC	breast
3	chr9:93697400-93698600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:93697400-93698600	Enhancers	Esophagus	oesophagus
5	chr9:93697600-93698600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:93698000-93704200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:93698400-93699200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:93698400-93699400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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