Variant report

Variant	rs1675297
Chromosome Location	chr9:93677489-93677490
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93677265..93679731-chr9:93797817..93800776,2	MCF-7	breast:
2	chr9:93676925..93677709-chr9:94443747..94444466,3	MCF-7	breast:
3	chr9:93677484..93678606-chr9:93720589..93721191,4	MCF-7	breast:
4	chr9:93676448..93679298-chr9:93745001..93748121,3	MCF-7	breast:
5	chr9:93676720..93679314-chr9:93684985..93688336,3	MCF-7	breast:
6	chr9:93677411..93678645-chr9:93726265..93727086,3	MCF-7	breast:
7	chr9:93676992..93677518-chr9:93726246..93727125,2	MCF-7	breast:
8	chr9:93677031..93677848-chr9:93745356..93746083,4	MCF-7	breast:
9	chr9:93676355..93678858-chr9:93753040..93754661,2	MCF-7	breast:
10	chr9:93674734..93679080-chr9:94183928..94188692,8	MCF-7	breast:
11	chr9:93676958..93678063-chr9:93745221..93746937,9	MCF-7	breast:
12	chr9:93676966..93677769-chr9:94188109..94189036,3	MCF-7	breast:
13	chr9:93677407..93679291-chr9:94178811..94181688,2	MCF-7	breast:
14	chr9:93677369..93677923-chr9:93881735..93882698,2	K562	blood:
15	chr9:93667547..93672614-chr9:93675610..93678546,4	MCF-7	breast:
16	chr9:93675751..93682846-chr9:94184185..94190004,10	MCF-7	breast:
17	chr9:93676920..93679148-chr9:93718490..93720720,2	MCF-7	breast:
18	chr9:93677291..93677869-chr9:94195160..94195912,2	MCF-7	breast:
19	chr9:93676159..93678392-chr9:93740956..93744804,3	MCF-7	breast:
20	chr9:93677459..93679335-chr9:93682010..93683558,2	MCF-7	breast:
21	chr9:93675804..93678355-chr9:93746477..93748516,2	MCF-7	breast:
22	chr9:93677111..93677818-chr9:94188112..94189007,2	MCF-7	breast:
23	chr9:93677133..93677996-chr9:93715404..93716043,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000233081	Chromatin interaction
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1041381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330682	1.00[CEU][hapmap]
rs1460828	0.85[MEX][hapmap]
rs158683	1.00[EUR][1000 genomes]
rs1614353	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1615082	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs167100	0.95[ASN][1000 genomes]
rs1675292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675295	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675302	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675303	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675305	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1675306	1.00[EUR][1000 genomes]
rs1675307	1.00[EUR][1000 genomes]
rs1675310	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1675312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1675313	0.95[ASN][1000 genomes]
rs169743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755983	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs190029	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1964918	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2774255	1.00[EUR][1000 genomes]
rs291746	1.00[EUR][1000 genomes]
rs291747	1.00[EUR][1000 genomes]
rs291749	1.00[EUR][1000 genomes]
rs291752	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291757	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291758	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291761	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291763	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291766	0.85[ASN][1000 genomes]
rs291767	0.90[ASN][1000 genomes]
rs296653	1.00[EUR][1000 genomes]
rs296654	1.00[EUR][1000 genomes]
rs296656	1.00[EUR][1000 genomes]
rs296658	1.00[CEU][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs296659	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs296660	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs296662	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs296670	1.00[EUR][1000 genomes]
rs296674	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs296675	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs296678	0.91[EUR][1000 genomes]
rs296685	0.91[EUR][1000 genomes]
rs296687	0.91[EUR][1000 genomes]
rs296689	0.91[EUR][1000 genomes]
rs296692	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs296694	0.82[EUR][1000 genomes]
rs296697	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs296704	0.91[EUR][1000 genomes]
rs296705	0.91[EUR][1000 genomes]
rs296707	0.82[EUR][1000 genomes]
rs296712	0.82[EUR][1000 genomes]
rs296720	0.82[EUR][1000 genomes]
rs296723	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs296727	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs364622	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs376648	0.91[EUR][1000 genomes]
rs390574	0.91[EUR][1000 genomes]
rs426365	0.91[EUR][1000 genomes]
rs7035409	0.85[MEX][hapmap]
rs7047670	0.85[MEX][hapmap]
rs7859976	0.85[MEX][hapmap]
rs928208	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039761	chr9:93598856-93677831	Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93658800-93683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93669600-93677600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:93674000-93681800	Weak transcription	Pancreas	Pancrea
4	chr9:93677000-93677800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:93677000-93677800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:93677000-93677800	Enhancers	Fetal Heart	heart
7	chr9:93677000-93678000	Enhancers	Stomach Mucosa	stomach
8	chr9:93677000-93679200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:93677200-93677600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr9:93677200-93677800	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr9:93677200-93677800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:93677200-93677800	Enhancers	HMEC	breast
13	chr9:93677200-93678000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr9:93677400-93677800	Enhancers	Duodenum Mucosa	Duodenum
15	chr9:93677400-93678600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:93677400-93678600	Enhancers	Liver	Liver
17	chr9:93677400-93681600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr9:93677400-93682000	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:93677400-93682200	Weak transcription	Fetal Brain Male	brain

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