Variant report

Variant	rs1675312
Chromosome Location	chr9:93673446-93673447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:33570918..33573809-chr9:93673202..93675698,2	MCF-7	breast:
2	chr9:93668679..93670953-chr9:93672594..93674147,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000076650	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1041381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1614353	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1615082	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167100	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675292	0.95[ASN][1000 genomes]
rs1675293	0.95[ASN][1000 genomes]
rs1675294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1675295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1675296	0.95[ASN][1000 genomes]
rs1675297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1675298	0.95[ASN][1000 genomes]
rs1675302	0.82[ASN][1000 genomes]
rs1675303	0.95[ASN][1000 genomes]
rs1675310	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1675313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs169743	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1755982	0.95[ASN][1000 genomes]
rs1755983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs184114	0.95[ASN][1000 genomes]
rs1964918	0.95[ASN][1000 genomes]
rs291752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs291754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs291755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs291757	0.95[ASN][1000 genomes]
rs291758	0.95[ASN][1000 genomes]
rs291759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs291761	0.95[ASN][1000 genomes]
rs291766	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs291767	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs928208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039761	chr9:93598856-93677831	Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93658800-93683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93662000-93677000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:93663200-93673800	Weak transcription	Thymus	Thymus
4	chr9:93663400-93673600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:93664800-93673600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:93665000-93673800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:93666600-93673600	Weak transcription	Primary B cells from cord blood	blood
8	chr9:93669600-93677600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:93671200-93674600	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:93671400-93674000	Enhancers	GM12878-XiMat	blood
11	chr9:93671600-93674800	Weak transcription	Fetal Stomach	stomach
12	chr9:93673200-93674200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:93673400-93674000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr9:93673400-93674400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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