Variant report

Variant	rs291759
Chromosome Location	chr9:93684679-93684680
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93683951..93686543-chr9:93700116..93702555,2	MCF-7	breast:
2	chr9:93683300..93685317-chr9:93705427..93707006,2	MCF-7	breast:
3	chr9:93682025..93684983-chr9:93787806..93789762,2	MCF-7	breast:
4	chr9:93681178..93683556-chr9:93684318..93687198,2	MCF-7	breast:
5	chr9:93679019..93680956-chr9:93684152..93687149,2	K562	blood:
6	chr9:93683207..93685388-chr9:94184914..94187994,3	MCF-7	breast:
7	chr9:93677665..93682323-chr9:93683536..93687193,5	MCF-7	breast:
8	chr9:93682204..93686521-chr9:93708730..93712212,6	MCF-7	breast:
9	chr9:93683879..93685397-chr9:93712353..93714560,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1041381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330682	1.00[CEU][hapmap]
rs1460828	0.85[MEX][hapmap]
rs158683	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1614353	0.95[ASN][1000 genomes]
rs1615082	0.95[ASN][1000 genomes]
rs167100	0.95[ASN][1000 genomes]
rs1675292	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675293	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675296	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675298	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1675303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1675306	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1675307	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1675310	0.85[ASN][1000 genomes]
rs1675312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1675313	0.95[ASN][1000 genomes]
rs169743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755982	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184114	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs190029	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1964918	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2774255	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291746	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291747	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291749	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291758	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs291766	0.85[ASN][1000 genomes]
rs291767	0.90[ASN][1000 genomes]
rs296653	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296654	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296656	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296658	1.00[CEU][hapmap];0.85[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296659	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296660	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296662	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296670	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296674	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs296675	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs296678	0.91[EUR][1000 genomes]
rs296685	0.91[EUR][1000 genomes]
rs296687	0.91[EUR][1000 genomes]
rs296689	0.91[EUR][1000 genomes]
rs296692	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs296694	0.82[EUR][1000 genomes]
rs296697	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs296704	0.91[EUR][1000 genomes]
rs296705	0.91[EUR][1000 genomes]
rs296707	0.82[EUR][1000 genomes]
rs296712	0.82[EUR][1000 genomes]
rs296720	0.82[EUR][1000 genomes]
rs296723	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs296727	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs364622	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs376648	0.91[EUR][1000 genomes]
rs390574	0.91[EUR][1000 genomes]
rs426365	0.91[EUR][1000 genomes]
rs7035409	0.85[MEX][hapmap]
rs7047670	0.85[MEX][hapmap]
rs7859976	0.85[MEX][hapmap]
rs928208	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv3437897	chr9:93680731-93685229	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93681400-93686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:93681400-93687200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:93682400-93684800	Enhancers	Pancreas	Pancrea
4	chr9:93683000-93692000	Weak transcription	Right Ventricle	heart
5	chr9:93683800-93686200	Weak transcription	Fetal Brain Male	brain
6	chr9:93683800-93686800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:93683800-93687000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:93684000-93685200	Weak transcription	NHEK	skin
9	chr9:93684000-93685800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:93684000-93686000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:93684000-93687400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:93684000-93687600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:93684000-93688400	Weak transcription	Aorta	Aorta
14	chr9:93684200-93687800	Weak transcription	Adipose Nuclei	Adipose
15	chr9:93684600-93686200	Weak transcription	HMEC	breast
16	chr9:93684600-93687600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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