Variant report

Variant	rs1460828
Chromosome Location	chr9:93777688-93777689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93757144..93760011-chr9:93776207..93778261,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260454	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10123625	1.00[EUR][1000 genomes]
rs1041381	0.85[MEX][hapmap]
rs10512204	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10991749	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1542478	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs1585456	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1585457	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1585458	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1585459	0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1675297	0.85[MEX][hapmap]
rs16907076	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907078	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907083	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907088	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16907095	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907114	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs16907129	1.00[EUR][1000 genomes]
rs169743	0.85[MEX][hapmap]
rs1841446	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406163	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28498576	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28508244	0.96[ASN][1000 genomes]
rs28548848	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28629371	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28720686	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs291759	0.85[MEX][hapmap]
rs296659	0.85[MEX][hapmap]
rs296692	0.85[MEX][hapmap]
rs296727	0.85[MEX][hapmap]
rs296729	0.85[ASN][1000 genomes]
rs364622	0.85[MEX][hapmap]
rs4991707	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55796701	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55837511	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56046303	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56099287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56215441	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56286690	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56748053	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57600683	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57756037	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57874603	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58087771	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58145618	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58848158	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58968598	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59262734	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59306422	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59874266	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60129254	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60691320	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60805834	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61300432	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61647505	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6479324	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479326	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479327	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7020346	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7024221	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7025659	1.00[EUR][1000 genomes]
rs7025935	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7027295	0.93[AFR][1000 genomes]
rs7032345	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7034744	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7035409	0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7039162	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7039179	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7039199	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7042483	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7047670	0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73492522	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73492530	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73492532	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73492542	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73492545	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73492551	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73505587	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73650905	0.85[AFR][1000 genomes]
rs73650906	0.90[AFR][1000 genomes]
rs73653522	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73653527	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs751279	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs753789	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs753790	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs753791	0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7852161	0.85[AFR][1000 genomes]
rs7852422	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7854907	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7855222	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7855269	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7856489	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7856691	0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7859976	0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7867663	0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7870440	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7873869	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93765200-93780400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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