Variant report

Variant	rs1542478
Chromosome Location	chr9:93825347-93825348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93823151..93825952-chr9:137000030..137002012,2	MCF-7	breast:
2	chr9:93823297..93826193-chr9:93828648..93831574,2	MCF-7	breast:
3	chr9:93820594..93822119-chr9:93824268..93826302,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196363	Chromatin interaction
ENSG00000273249	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10123625	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512204	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10991749	1.00[EUR][1000 genomes]
rs1460828	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs1585456	1.00[EUR][1000 genomes]
rs1585457	1.00[EUR][1000 genomes]
rs1585458	1.00[EUR][1000 genomes]
rs1585459	1.00[EUR][1000 genomes]
rs16907076	1.00[EUR][1000 genomes]
rs16907078	1.00[EUR][1000 genomes]
rs16907083	1.00[EUR][1000 genomes]
rs16907088	1.00[EUR][1000 genomes]
rs16907095	1.00[EUR][1000 genomes]
rs16907097	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs16907114	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907129	1.00[EUR][1000 genomes]
rs1841446	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs28406163	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28498576	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28548848	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28629371	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28720686	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4991707	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55796701	1.00[EUR][1000 genomes]
rs55837511	1.00[EUR][1000 genomes]
rs56046303	1.00[EUR][1000 genomes]
rs56099287	1.00[EUR][1000 genomes]
rs56215441	1.00[EUR][1000 genomes]
rs56286690	1.00[EUR][1000 genomes]
rs56748053	1.00[EUR][1000 genomes]
rs57600683	1.00[EUR][1000 genomes]
rs57756037	1.00[EUR][1000 genomes]
rs57874603	1.00[EUR][1000 genomes]
rs58087771	1.00[EUR][1000 genomes]
rs58145618	1.00[EUR][1000 genomes]
rs58848158	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58968598	1.00[EUR][1000 genomes]
rs59262734	1.00[EUR][1000 genomes]
rs59306422	1.00[EUR][1000 genomes]
rs59874266	1.00[EUR][1000 genomes]
rs60129254	1.00[EUR][1000 genomes]
rs60691320	1.00[EUR][1000 genomes]
rs60805834	1.00[EUR][1000 genomes]
rs61300432	1.00[EUR][1000 genomes]
rs61647505	1.00[EUR][1000 genomes]
rs6479324	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6479326	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6479327	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7020346	1.00[EUR][1000 genomes]
rs7024221	1.00[EUR][1000 genomes]
rs7025659	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7025935	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7032345	1.00[EUR][1000 genomes]
rs7034744	1.00[EUR][1000 genomes]
rs7035409	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs7039162	1.00[EUR][1000 genomes]
rs7039179	1.00[EUR][1000 genomes]
rs7039199	1.00[EUR][1000 genomes]
rs7042483	1.00[EUR][1000 genomes]
rs7047670	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs73492522	1.00[EUR][1000 genomes]
rs73492530	1.00[EUR][1000 genomes]
rs73492532	1.00[EUR][1000 genomes]
rs73492542	1.00[EUR][1000 genomes]
rs73492545	1.00[EUR][1000 genomes]
rs73492551	1.00[EUR][1000 genomes]
rs73505587	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73653522	1.00[EUR][1000 genomes]
rs73653527	1.00[EUR][1000 genomes]
rs751279	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs753789	0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs753790	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs753791	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7852422	1.00[EUR][1000 genomes]
rs7854907	1.00[EUR][1000 genomes]
rs7855222	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs7855269	1.00[EUR][1000 genomes]
rs7856489	1.00[EUR][1000 genomes]
rs7856691	1.00[EUR][1000 genomes]
rs7859976	1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs7867663	1.00[EUR][1000 genomes]
rs7870440	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7873869	1.00[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93821800-93826200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:93822000-93825800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr9:93822000-93826400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr9:93823000-93826200	Enhancers	Psoas Muscle	Psoas
5	chr9:93823600-93825400	Enhancers	HepG2	liver
6	chr9:93824000-93825400	Enhancers	Hela-S3	cervix
7	chr9:93824000-93833400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:93824400-93825800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:93824600-93833400	Weak transcription	NHLF	lung
10	chr9:93824800-93827600	Weak transcription	Esophagus	oesophagus
11	chr9:93824800-93833400	Weak transcription	Spleen	Spleen
12	chr9:93825200-93825800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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