Variant report

Variant	rs73492542
Chromosome Location	chr9:93755456-93755457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:37)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:37 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr9:93754944-93755524	HCT-116	colon:	n/a	n/a
2	PBX3	chr9:93754979-93755491	SK-N-SH	brain:	n/a	n/a
3	SP1	chr9:93754859-93755557	HCT-116	colon:	n/a	n/a
4	SIN3AK20	chr9:93754902-93755528	HCT-116	colon:	n/a	n/a
5	TEAD4	chr9:93754882-93755465	A549	lung:	n/a	n/a
6	SP1	chr9:93754901-93755498	HCT-116	colon:	n/a	n/a
7	EP300	chr9:93754916-93755508	SK-N-SH	brain:	n/a	n/a
8	EP300	chr9:93754848-93755546	A549	lung:	n/a	n/a
9	POLR2A	chr9:93754918-93755459	U87	brain:	n/a	n/a
10	GATA3	chr9:93754907-93755474	A549	lung:	n/a	n/a
11	FOSL2	chr9:93754258-93755562	A549	lung:	n/a	n/a
12	JUND	chr9:93754904-93755534	SK-N-SH	brain:	n/a	n/a
13	SP1	chr9:93754799-93755469	A549	lung:	n/a	n/a
14	CEBPB	chr9:93754796-93755548	HCT-116	colon:	n/a	n/a
15	GABPA	chr9:93754992-93755470	A549	lung:	n/a	n/a
16	MAX	chr9:93754960-93755506	A549	lung:	n/a	n/a
17	FOSL1	chr9:93754806-93755545	HCT-116	colon:	n/a	n/a
18	GATA3	chr9:93754834-93755513	SK-N-SH	brain:	n/a	n/a
19	REST	chr9:93754860-93755475	A549	lung:	n/a	n/a
20	GATA3	chr9:93754754-93755585	SK-N-SH	brain:	n/a	n/a
21	GATA3	chr9:93754075-93755660	A549	lung:	n/a	n/a
22	BCL3	chr9:93754914-93755491	A549	lung:	n/a	n/a
23	FOSL1	chr9:93754891-93755553	HCT-116	colon:	n/a	n/a
24	EP300	chr9:93755018-93755598	SK-N-SH	brain:	n/a	n/a
25	NFIC	chr9:93754769-93755462	SK-N-SH	brain:	n/a	n/a
26	TCF12	chr9:93754832-93755518	SK-N-SH	brain:	n/a	n/a
27	EP300	chr9:93754078-93755612	A549	lung:	n/a	n/a
28	TCF12	chr9:93754857-93755500	SK-N-SH	brain:	n/a	n/a
29	SIN3AK20	chr9:93755024-93755472	HCT-116	colon:	n/a	n/a
30	JUND	chr9:93754880-93755489	HCT-116	colon:	n/a	n/a
31	CEBPB	chr9:93754910-93755508	A549	lung:	n/a	n/a
32	FOSL2	chr9:93754908-93755524	SK-N-SH	brain:	n/a	n/a
33	MAX	chr9:93754948-93755563	A549	lung:	n/a	n/a
34	TCF12	chr9:93754919-93755599	A549	lung:	n/a	n/a
35	CEBPB	chr9:93754894-93755511	HCT-116	colon:	n/a	n/a
36	JUND	chr9:93754866-93755515	SK-N-SH	brain:	n/a	n/a
37	FOXA2	chr9:93754881-93755494	A549	lung:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93752121..93756766-chr9:93756926..93762091,5	MCF-7	breast:
2	chr9:93748152..93750043-chr9:93753873..93756250,2	MCF-7	breast:
3	chr9:93740191..93743980-chr9:93753139..93756785,4	MCF-7	breast:
4	chr9:93699190..93702155-chr9:93754434..93756320,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260454	TF binding region
ENSG00000260454	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10123625	1.00[EUR][1000 genomes]
rs10512204	1.00[EUR][1000 genomes]
rs10991749	1.00[EUR][1000 genomes]
rs1460828	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1542478	1.00[EUR][1000 genomes]
rs1585456	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585458	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585459	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907076	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907078	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907083	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907088	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907095	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907097	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907114	1.00[EUR][1000 genomes]
rs16907129	1.00[EUR][1000 genomes]
rs1841446	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28406163	1.00[EUR][1000 genomes]
rs28498576	1.00[EUR][1000 genomes]
rs28508244	0.83[ASN][1000 genomes]
rs28548848	1.00[EUR][1000 genomes]
rs28629371	1.00[EUR][1000 genomes]
rs28720686	1.00[EUR][1000 genomes]
rs296729	0.98[ASN][1000 genomes]
rs4991707	1.00[EUR][1000 genomes]
rs55796701	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55837511	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56046303	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56099287	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56215441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56286690	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56748053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57600683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57756037	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57874603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58087771	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58145618	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58848158	1.00[EUR][1000 genomes]
rs58968598	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59262734	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59306422	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59874266	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60129254	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60691320	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60805834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61300432	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61647505	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479324	1.00[EUR][1000 genomes]
rs6479326	1.00[EUR][1000 genomes]
rs6479327	1.00[EUR][1000 genomes]
rs7020346	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024221	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025659	1.00[EUR][1000 genomes]
rs7025935	1.00[EUR][1000 genomes]
rs7032345	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7034744	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035409	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039162	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039179	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039199	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042483	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7046222	0.92[AFR][1000 genomes]
rs7047670	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492518	0.86[AFR][1000 genomes]
rs73492522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492530	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492544	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73492545	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492551	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73505587	1.00[EUR][1000 genomes]
rs73653521	0.94[AFR][1000 genomes]
rs73653522	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653527	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs751279	1.00[EUR][1000 genomes]
rs753789	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs753790	1.00[EUR][1000 genomes]
rs753791	1.00[EUR][1000 genomes]
rs7852422	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854507	0.97[AFR][1000 genomes]
rs7854907	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856489	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856691	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859976	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867663	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870440	1.00[EUR][1000 genomes]
rs7873869	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93753800-93755600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:93753800-93755600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr9:93754000-93755600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:93754000-93755600	Enhancers	HUVEC	blood vessel
5	chr9:93754000-93755600	Enhancers	NH-A	brain
6	chr9:93754800-93756400	Weak transcription	Adipose Nuclei	Adipose
7	chr9:93754800-93757600	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:93754800-93758000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:93754800-93763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:93755000-93755600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:93755000-93758000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:93755000-93758000	Weak transcription	NHDF-Ad	bronchial
13	chr9:93755000-93758200	Weak transcription	NHLF	lung
14	chr9:93755000-93760600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:93755000-93760800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:93755000-93760800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:93755000-93760800	Weak transcription	HMEC	breast
18	chr9:93755000-93761000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:93755200-93758600	Weak transcription	Liver	Liver
20	chr9:93755200-93760600	Weak transcription	Hela-S3	cervix

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