Variant report

Variant	rs7870440
Chromosome Location	chr9:93812851-93812852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93810781..93813206-chr9:94186622..94189150,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233081	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10122868	1.00[AMR][1000 genomes]
rs10123625	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10512204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991749	1.00[EUR][1000 genomes]
rs1460828	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1542478	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1585456	1.00[EUR][1000 genomes]
rs1585457	1.00[EUR][1000 genomes]
rs1585458	1.00[EUR][1000 genomes]
rs1585459	1.00[EUR][1000 genomes]
rs16907076	1.00[EUR][1000 genomes]
rs16907078	1.00[EUR][1000 genomes]
rs16907083	1.00[EUR][1000 genomes]
rs16907088	1.00[EUR][1000 genomes]
rs16907095	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907097	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907114	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16907129	1.00[EUR][1000 genomes]
rs1841446	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28406163	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28498576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28508244	0.81[ASN][1000 genomes]
rs28548848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28629371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28720686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4991707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55796701	1.00[EUR][1000 genomes]
rs55837511	1.00[EUR][1000 genomes]
rs56046303	1.00[EUR][1000 genomes]
rs56099287	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56215441	1.00[EUR][1000 genomes]
rs56286690	1.00[EUR][1000 genomes]
rs56748053	1.00[EUR][1000 genomes]
rs57600683	1.00[EUR][1000 genomes]
rs57756037	1.00[EUR][1000 genomes]
rs57874603	1.00[EUR][1000 genomes]
rs58087771	1.00[EUR][1000 genomes]
rs58145618	1.00[EUR][1000 genomes]
rs58848158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58968598	1.00[EUR][1000 genomes]
rs59262734	1.00[EUR][1000 genomes]
rs59306422	1.00[EUR][1000 genomes]
rs59874266	1.00[EUR][1000 genomes]
rs60129254	1.00[EUR][1000 genomes]
rs60691320	1.00[EUR][1000 genomes]
rs60805834	1.00[EUR][1000 genomes]
rs61300432	1.00[EUR][1000 genomes]
rs61647505	1.00[EUR][1000 genomes]
rs6479324	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479325	1.00[AMR][1000 genomes]
rs6479326	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6479327	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7020346	1.00[EUR][1000 genomes]
rs7024221	1.00[EUR][1000 genomes]
rs7025659	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7025935	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7032345	1.00[EUR][1000 genomes]
rs7034744	1.00[EUR][1000 genomes]
rs7035409	1.00[EUR][1000 genomes]
rs7039162	1.00[EUR][1000 genomes]
rs7039179	1.00[EUR][1000 genomes]
rs7039199	1.00[EUR][1000 genomes]
rs7042483	1.00[EUR][1000 genomes]
rs7047670	1.00[EUR][1000 genomes]
rs73492522	1.00[EUR][1000 genomes]
rs73492530	1.00[EUR][1000 genomes]
rs73492532	1.00[EUR][1000 genomes]
rs73492542	1.00[EUR][1000 genomes]
rs73492545	1.00[EUR][1000 genomes]
rs73492551	1.00[EUR][1000 genomes]
rs73505587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653522	1.00[EUR][1000 genomes]
rs73653527	1.00[EUR][1000 genomes]
rs751279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs753789	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs753790	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs753791	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7852422	1.00[EUR][1000 genomes]
rs7854907	1.00[EUR][1000 genomes]
rs7855222	1.00[EUR][1000 genomes]
rs7855269	1.00[EUR][1000 genomes]
rs7856489	1.00[EUR][1000 genomes]
rs7856691	1.00[EUR][1000 genomes]
rs7859976	1.00[EUR][1000 genomes]
rs7867663	1.00[EUR][1000 genomes]
rs7873869	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93810200-93823000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:93810400-93813000	Enhancers	HepG2	liver
3	chr9:93811200-93815200	Weak transcription	HUVEC	blood vessel
4	chr9:93811400-93813600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:93811400-93816200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:93812800-93813000	Enhancers	Duodenum Mucosa	Duodenum

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