Variant report

Variant	rs10991749
Chromosome Location	chr9:93796874-93796875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10123625	1.00[EUR][1000 genomes]
rs10512204	0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes]
rs1460828	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1542478	0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs1585456	1.00[EUR][1000 genomes]
rs1585457	1.00[EUR][1000 genomes]
rs1585458	1.00[EUR][1000 genomes]
rs1585459	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs16907076	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16907078	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16907083	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16907088	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16907095	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907097	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16907114	0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs16907129	1.00[EUR][1000 genomes]
rs1841446	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28406163	1.00[EUR][1000 genomes]
rs28498576	1.00[EUR][1000 genomes]
rs28508244	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28548848	1.00[EUR][1000 genomes]
rs28629371	1.00[EUR][1000 genomes]
rs28720686	1.00[EUR][1000 genomes]
rs4991707	1.00[EUR][1000 genomes]
rs55796701	1.00[EUR][1000 genomes]
rs55837511	1.00[EUR][1000 genomes]
rs56046303	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56099287	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56215441	1.00[EUR][1000 genomes]
rs56286690	1.00[EUR][1000 genomes]
rs56748053	1.00[EUR][1000 genomes]
rs57600683	1.00[EUR][1000 genomes]
rs57756037	1.00[EUR][1000 genomes]
rs57874603	1.00[EUR][1000 genomes]
rs58087771	1.00[EUR][1000 genomes]
rs58145618	1.00[EUR][1000 genomes]
rs58848158	1.00[EUR][1000 genomes]
rs58968598	1.00[EUR][1000 genomes]
rs59262734	1.00[EUR][1000 genomes]
rs59306422	1.00[EUR][1000 genomes]
rs59874266	1.00[EUR][1000 genomes]
rs60129254	1.00[EUR][1000 genomes]
rs60691320	1.00[EUR][1000 genomes]
rs60805834	1.00[EUR][1000 genomes]
rs61300432	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61647505	1.00[EUR][1000 genomes]
rs6479324	0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6479326	0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6479327	0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7020346	1.00[EUR][1000 genomes]
rs7024221	1.00[EUR][1000 genomes]
rs7025659	1.00[EUR][1000 genomes]
rs7025935	0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7032345	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7034744	1.00[EUR][1000 genomes]
rs7035409	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7039162	1.00[EUR][1000 genomes]
rs7039179	1.00[EUR][1000 genomes]
rs7039199	1.00[EUR][1000 genomes]
rs7042483	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7047670	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs73492522	1.00[EUR][1000 genomes]
rs73492530	1.00[EUR][1000 genomes]
rs73492532	1.00[EUR][1000 genomes]
rs73492542	1.00[EUR][1000 genomes]
rs73492545	1.00[EUR][1000 genomes]
rs73492551	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73505587	1.00[EUR][1000 genomes]
rs73653522	1.00[EUR][1000 genomes]
rs73653527	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs751279	0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs753789	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs753790	0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs753791	0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7852422	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7854907	1.00[EUR][1000 genomes]
rs7855222	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7855269	1.00[EUR][1000 genomes]
rs7856489	1.00[EUR][1000 genomes]
rs7856691	0.81[JPT][hapmap];1.00[EUR][1000 genomes]
rs7859976	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7867663	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs7870440	1.00[EUR][1000 genomes]
rs7873869	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv523562	chr9:93791410-93800017	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93793600-93799400	Weak transcription	Liver	Liver
2	chr9:93794400-93798600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:93794800-93798600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:93794800-93799200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:93795800-93798800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:93796000-93797400	Enhancers	GM12878-XiMat	blood
7	chr9:93796000-93800200	Enhancers	Primary B cells from peripheral blood	blood
8	chr9:93796200-93799000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:93796400-93797000	Enhancers	Spleen	Spleen
10	chr9:93796400-93799200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:93796600-93797800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr9:93796800-93797000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:93796800-93797000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:93796800-93798800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:93796800-93799200	Enhancers	HepG2	liver

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