Variant report

Variant	rs56215441
Chromosome Location	chr9:93758347-93758348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10123625	1.00[EUR][1000 genomes]
rs10512204	1.00[EUR][1000 genomes]
rs10991749	1.00[EUR][1000 genomes]
rs1460828	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1542478	1.00[EUR][1000 genomes]
rs1585456	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907076	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907078	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907083	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907088	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16907095	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907097	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16907114	1.00[EUR][1000 genomes]
rs16907129	1.00[EUR][1000 genomes]
rs1841446	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28406163	1.00[EUR][1000 genomes]
rs28498576	1.00[EUR][1000 genomes]
rs28508244	0.83[ASN][1000 genomes]
rs28548848	1.00[EUR][1000 genomes]
rs28629371	1.00[EUR][1000 genomes]
rs28720686	1.00[EUR][1000 genomes]
rs296729	0.98[ASN][1000 genomes]
rs4991707	1.00[EUR][1000 genomes]
rs55796701	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55837511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56046303	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56099287	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56286690	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56748053	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57191437	0.80[AFR][1000 genomes]
rs57600683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57756037	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57874603	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58087771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58145618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58848158	1.00[EUR][1000 genomes]
rs58968598	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59262734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59306422	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59874266	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60129254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60691320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60805834	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61300432	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61647505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479324	1.00[EUR][1000 genomes]
rs6479326	1.00[EUR][1000 genomes]
rs6479327	1.00[EUR][1000 genomes]
rs7020346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024221	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025659	1.00[EUR][1000 genomes]
rs7025935	1.00[EUR][1000 genomes]
rs7032345	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7034744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039162	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039179	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039199	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042483	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7046222	0.96[AFR][1000 genomes]
rs7047670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492505	0.82[AFR][1000 genomes]
rs73492518	0.89[AFR][1000 genomes]
rs73492522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492542	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492544	0.95[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73492545	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73492551	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73505587	1.00[EUR][1000 genomes]
rs73653521	0.97[AFR][1000 genomes]
rs73653522	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653527	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs751279	1.00[EUR][1000 genomes]
rs753789	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs753790	1.00[EUR][1000 genomes]
rs753791	1.00[EUR][1000 genomes]
rs7852422	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854507	1.00[AFR][1000 genomes]
rs7854907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859976	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870440	1.00[EUR][1000 genomes]
rs7873869	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93754800-93763400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:93755000-93760600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:93755000-93760800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:93755000-93760800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:93755000-93760800	Weak transcription	HMEC	breast
6	chr9:93755000-93761000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:93755200-93758600	Weak transcription	Liver	Liver
8	chr9:93755200-93760600	Weak transcription	Hela-S3	cervix
9	chr9:93755600-93760600	Weak transcription	HUVEC	blood vessel
10	chr9:93755600-93760800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:93755600-93760800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:93755600-93761200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:93755600-93763200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:93758000-93758400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr9:93758000-93758400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:93758000-93758400	Enhancers	Thymus	Thymus
17	chr9:93758000-93758600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr9:93758000-93758600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr9:93758000-93758600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:93758000-93758800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:93758000-93758800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr9:93758000-93758800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:93758000-93758800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:93758000-93758800	Enhancers	NHDF-Ad	bronchial
25	chr9:93758000-93759000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr9:93758000-93759000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr9:93758000-93759000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:93758000-93759400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:93758200-93758600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr9:93758200-93759000	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links